myRT

myRT report for GCA_013030645.1_ASM1303064v1

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Seq: JABBFI010000070.1 Escherichia coli strain C106 Sample_C106_R1_contig_72_consensus, whole genome shotgun sequence (3221 bp)
Overview 1 RT 1: 1-3052 bp Neighborhood of RT #1 [1, 3069] RVT-UG15 PRK09692 Feature: gene Location: 1-177 bp Feature: gene Location: 272-1882 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 680-1103 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 680-1 1 03 bp Feature: gene Location: 1900-3069 bp Feature: domain Description: PRK09692 Location: 1909-3052 bp Feature: domain Description: PRK09692 Location: 1 909-3052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, PRK09692 (Integrase; provisional)

Seq: JABBFI010000078.1 Escherichia coli strain C106 Sample_C106_R1_contig_81_consensus, whole genome shotgun sequence (5659 bp)
Overview 1 RT 1: 2237-4980 bp Neighborhood of RT #1 [2237, 5075] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2237-2470 bp Feature: domain Description: DUF905 Location: 2267-2465 bp Feature: domain Description: DUF905 Location: 2 2 67-2 465 bp Feature: gene Location: 2526-2978 bp Feature: domain Description: PRK13732 Location: 2532-2976 bp Feature: domain Description: PRK13732 Location: 2 532 -2 976 bp Feature: gene Location: 3174-5075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3441-4272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3441-42 72 bp Feature: domain Description: Intron_maturas2 Location: 4386-4644 bp Feature: domain Description: Intron_maturas2 Location: 4386-4644 bp Feature: domain Description: HNHc Note: nucleases Location: 4818-4980 bp Feature: domain Description: HNHc Note: nucleases Location: 4818-4980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABBFI010000088.1 Escherichia coli strain C106 Sample_C106_R1_contig_92_consensus, whole genome shotgun sequence (9277 bp)
Overview 1 RT 1: 5261-9276 bp Neighborhood of RT #1 [5261, 9276] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 5261-5464 bp Feature: gene Location: 5945-6085 bp Feature: gene Location: 6107-7831 bp Feature: domain Description: RVT_N Location: 6164-6401 bp Feature: domain Description: RVT_N Location: 6164-6401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6452-7100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6452-7100 bp Feature: domain Description: YkfC Location: 7232-7388 bp Feature: domain Description: YkfC Location: 723 2-73 88 bp Feature: domain Description: HNHc Note: nucleases Location: 7616-7775 bp Feature: domain Description: HNHc Note: nucleases Location: 7616-7775 bp Feature: gene Location: 7909-8811 bp Feature: domain Description: DUF1281 Location: 7978-8506 bp Feature: domain Description: DUF1281 Location: 7978-8506 bp Feature: domain Description: DUF1281_C Location: 8512-8752 bp Feature: domain Description: DUF1281_C Location: 8512-8752 bp Feature: gene Location: 8881-9276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)