myRT

myRT report for GCA_013030755.1_ASM1303075v1

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Seq: JABBGV010000177.1 Escherichia coli strain B97 Sample_97_R1_contig_184_consensus, whole genome shotgun sequence (5614 bp)
Overview 1 RT 1: 211-3939 bp Neighborhood of RT #1 [211, 3944] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 211-417 bp Feature: gene Location: 751-960 bp Feature: gene Location: 1095-2996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1362-2193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 362-21 93 bp Feature: domain Description: Intron_maturas2 Location: 2307-2565 bp Feature: domain Description: Intron_maturas2 Location: 2307-2565 bp Feature: domain Description: HNHc Note: nucleases Location: 2739-2901 bp Feature: domain Description: HNHc Note: nucleases Location: 2739-2901 bp Feature: gene Location: 3191-3643 bp Feature: domain Description: PRK13732 Location: 3197-3641 bp Feature: domain Description: PRK1 3732 Location: 31 97-3641 bp Feature: gene Location: 3711-3944 bp Feature: domain Description: DUF905 Location: 3741-3939 bp Feature: domain Description: DUF905 Location: 3741 -3939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JABBGV010000019.1 Escherichia coli strain B97 Sample_97_R1_contig_19_consensus, whole genome shotgun sequence (118815 bp)
Overview 1 RT 1: 49875-53816 bp Neighborhood of RT #1 [49875, 53816] RVT-Retrons Feature: gene Location: 49875-50114 bp Feature: gene Location: 50421-50597 bp Feature: gene Location: 50670-52442 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50829-51447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5082 9-51447 bp Feature: gene Location: 52464-52631 bp Feature: gene Location: 52677-53816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JABBGV010000200.1 Escherichia coli strain B97 Sample_97_R1_contig_209_consensus, whole genome shotgun sequence (11635 bp)
Overview 1 RT 1: 7059-10932 bp Neighborhood of RT #1 [7059, 11303] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7059-7235 bp Feature: gene Location: 7643-8347 bp Feature: domain Description: SLATT_5 Location: 7805-8315 bp Feature: domain Description: SLATT_5 Location: 7805-83 15 bp Feature: gene Location: 8325-9695 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8553-9159 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8553 -9159 bp Feature: gene Location: 9808-10392 bp Feature: domain Description: Caudo_TAP Location: 10024-10381 bp Feature: domain Description: Caudo_TAP Location: 10024-103 81 bp Feature: gene Location: 10401-11303 bp Feature: domain Description: Macro_Appr_pase Location: 10419-10932 bp Feature: domain Description: Macro_Appr_pase Location: 10419-1093 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: JABBGV010000097.1 Escherichia coli strain B97 Sample_97_R1_contig_99_consensus, whole genome shotgun sequence (2531 bp)
Overview 1 RT 1: 1-2530 bp Neighborhood of RT #1 [1, 2530] PHA02517 RVT-GII GIIM Feature: gene Location: 1-243 bp Feature: domain Description: PHA02517 Location: 4-244 bp Feature: domain Description: PHA02517 Location: 4 -24 4 bp Feature: gene Location: 360-1883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1365 bp Feature: domain Description: GIIM Note: maturase Location: 1440-1638 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 0-1638 bp Feature: gene Location: 2177-2530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)