myRT

myRT report for GCA_013030845.1_ASM1303084v1

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Seq: JABBGS010000131.1 Escherichia coli strain B65 Sample_65_R2_contig_134_consensus, whole genome shotgun sequence (2568 bp)
Overview 1 RT 1: 2-2568 bp Neighborhood of RT #1 [2, 2567] RVT-GII GIIM PHA02517 Feature: gene Location: 2-355 bp Feature: gene Location: 649-2172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1 654 bp Feature: domain Description: GIIM Note: maturase Location: 1729-1927 bp Feature: domain Description: GIIM Note: maturase Location: 1 729-1 927 bp Feature: gene Location: 2289-2567 bp Feature: domain Description: PHA02517 Location: 2292-2568 bp Feature: domain Description: PHA0251 7 Location: 2292-2568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABBGS010000135.1 Escherichia coli strain B65 Sample_65_R2_contig_139_consensus, whole genome shotgun sequence (5515 bp)
Overview 1 RT 1: 1632-5514 bp Neighborhood of RT #1 [1632, 5514] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1632-1865 bp Feature: domain Description: DUF905 Location: 1662-1860 bp Feature: domain Description: DUF905 Location: 1662 -1860 bp Feature: gene Location: 1933-2385 bp Feature: domain Description: PRK13732 Location: 1939-2383 bp Feature: domain Description: PRK13732 Location: 1939-2 383 bp Feature: gene Location: 2580-4481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847-3678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 847-3678 bp Feature: domain Description: Intron_maturas2 Location: 3792-4050 bp Feature: domain Description: Intron_maturas2 Location: 3792 -4050 bp Feature: domain Description: HNHc Note: nucleases Location: 4224-4386 bp Feature: domain Description: HNHc Note: nucleases Location: 42 2 4-4386 bp Feature: gene Location: 5278-5514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABBGS010000139.1 Escherichia coli strain B65 Sample_65_R2_contig_143_consensus, whole genome shotgun sequence (11635 bp)
Overview 1 RT 1: 7059-10932 bp Neighborhood of RT #1 [7059, 11303] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7059-7235 bp Feature: gene Location: 7643-8347 bp Feature: domain Description: SLATT_5 Location: 7805-8315 bp Feature: domain Description: SLATT_5 Location: 7805-83 15 bp Feature: gene Location: 8325-9695 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8553-9159 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8553 -9159 bp Feature: gene Location: 9808-10392 bp Feature: domain Description: Caudo_TAP Location: 10024-10381 bp Feature: domain Description: Caudo_TAP Location: 10024-103 81 bp Feature: gene Location: 10401-11303 bp Feature: domain Description: Macro_Appr_pase Location: 10419-10932 bp Feature: domain Description: Macro_Appr_pase Location: 10419-1093 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: JABBGS010000043.1 Escherichia coli strain B65 Sample_65_R2_contig_43_consensus, whole genome shotgun sequence (113284 bp)
Overview 1 RT 1: 65058-68999 bp Neighborhood of RT #1 [65058, 68999] RVT-Retrons Feature: gene Location: 65058-66197 bp Feature: gene Location: 66243-66410 bp Feature: gene Location: 66432-68204 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66591-67209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66591-67209 bp Feature: gene Location: 68425-68568 bp Feature: gene Location: 68760-68999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons