myRT

myRT report for GCA_013032095.1_ASM1303209v1

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Seq: WQBJ01000019.1 Ruegeria atlantica strain HKCCD9103 NODE_19, whole genome shotgun sequence (85161 bp)
Overview 1 RT 1: 177-2223 bp Neighborhood of RT #1 [177, 2249] RVT-GII RVT-GII Rve Feature: gene Location: 177-491 bp Feature: gene Location: 535-1095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 -1 030 bp Feature: gene Location: 1117-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-1459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 321 -1 459 bp Feature: gene Location: 1406-1747 bp Feature: gene Location: 1974-2249 bp Feature: domain Description: Rve Location: 2010-2223 bp Feature: domain Description: Rve Location: 201 0-2223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rve (COG3316)

Seq: WQBJ01000031.1 Ruegeria atlantica strain HKCCD9103 NODE_31, whole genome shotgun sequence (43433 bp)
Overview 1 RT 1: 30187-35424 bp Neighborhood of RT #1 [30187, 35424] AlpA RVT-CRISPR-like Feature: gene Location: 30187-30813 bp Feature: gene Location: 30966-31148 bp Feature: domain Description: AlpA Location: 30978-31137 bp Feature: domain Description: AlpA Location: 30978-31137 bp Feature: gene Location: 31215-32588 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 31731-32118 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 31731-32 118 bp Feature: gene Location: 32711-32953 bp Feature: gene Location: 33091-35424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-CRISPR

Seq: WQBJ01000044.1 Ruegeria atlantica strain HKCCD9103 NODE_44, whole genome shotgun sequence (28937 bp)
Overview 1 RT 1: 69-1961 bp Neighborhood of RT #1 [69, 1961] RVT-GII Transposase_20 Feature: gene Location: 69-404 bp Feature: gene Location: 370-1005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784-919 bp Feature: gene Location: 1180-1563 bp Feature: domain Description: Transposase_20 Location: 1183-1396 bp Feature: domain Description: Transposase_20 Location: 1183 -13 96 bp Feature: gene Location: 1707-1961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_20 (pfam02371)

Seq: WQBJ01000099.1 Ruegeria atlantica strain HKCCD9103 NODE_99, whole genome shotgun sequence (9821 bp)
Overview 1 RT 1: 1-6174 bp Neighborhood of RT #1 [1, 6203] Helicase_C_4 RVT-GII GIIM Helicase_C_4 COG4951 SSL2 Feature: gene Location: 1-966 bp Feature: domain Description: Helicase_C_4 Location: 10-310 bp Feature: domain Description: Helicase_C_4 Location: 10-310 bp Feature: gene Location: 1097-2596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508-2201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1508-2201 bp Feature: domain Description: GIIM Note: maturase Location: 2273-2489 bp Feature: domain Description: GIIM Note: maturase Location: 2273-24 89 bp Feature: gene Location: 2918-3604 bp Feature: domain Description: Helicase_C_4 Location: 3191-3575 bp Feature: domain Description: Helicase_C_4 Location: 3191-3575 bp Feature: gene Location: 3756-6203 bp Feature: domain Description: COG4951 Location: 3837-4971 bp Feature: domain Description: COG4 951 Location: 3837-4 971 bp Feature: domain Description: SSL2 Location: 5031-6174 bp Feature: domain Description: SSL2 Location: 5031-6174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Helicase_C_4 (pfam13871), RVT-GII, GIIM (pfam08388), COG4951 (Uncharacterized protein ), SSL2 (COG1061)