myRT

myRT report for GCA_013032505.1_ASM1303250v1

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Seq: WQCG01000013.1 Ruegeria atlantica strain HKCCD6212 NODE_13, whole genome shotgun sequence (37497 bp)
Overview 1 RT 1: 1874-12948 bp Neighborhood of RT #1 [1874, 13667] RecQ UvrD UvrD UvrD RVT-AbiP2 RHS_repeat YD_repeat_2x RnfG YD_repeat_2x RHS_repeat Feature: gene Location: 1874-3235 bp Feature: gene Location: 3565-8694 bp Feature: domain Description: RecQ Location: 4396-5491 bp Feature: domain Description: RecQ Location: 4396-5491 bp Feature: domain Description: UvrD Location: 6847-7120 bp Feature: domain Description: UvrD Location: 6847-71 20 bp Feature: domain Description: UvrD Location: 7234-7768 bp Feature: domain Description: UvrD Location: 7234-7768 bp Feature: domain Description: UvrD Location: 8053-8236 bp Feature: domain Description: UvrD Location: 8053-8236 bp Feature: gene Location: 9058-10563 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 9487-9934 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 9487-9934 bp Feature: gene Location: 10802-11188 bp Feature: gene Location: 11319-13667 bp Feature: domain Description: RHS_repeat Location: 11358-11418 bp Feature: domain Description: RHS_repeat Location: 1 1 358-1 1 41 8 bp Feature: domain Description: YD_repeat_2x Location: 11799-11853 bp Feature: domain Description: YD_repeat_2x Location: 1 1 799-1 1 853 bp Feature: domain Description: RnfG Location: 12210-12417 bp Feature: domain Description: RnfG Location: 1 221 0-1 241 7 bp Feature: domain Description: YD_repeat_2x Location: 12738-12789 bp Feature: domain Description: YD_repeat_2x Location: 1 2738-1 2789 bp Feature: domain Description: RHS_repeat Location: 12837-12948 bp Feature: domain Description: RHS_repeat Location: 1 2837-1 2948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RecQ (COG0514), UvrD (COG0210), RVT-AbiP2, RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), RnfG (COG4659)

Seq: WQCG01000003.1 Ruegeria atlantica strain HKCCD6212 NODE_3, whole genome shotgun sequence (756539 bp)
Overview 1 RT 1: 159692-163254 bp Neighborhood of RT #1 [159692, 163254] DZR DZR RVT-Retrons HTH_XRE Feature: gene Location: 159692-160174 bp Feature: gene Location: 160584-161471 bp Feature: domain Description: DZR Location: 161082-161199 bp Feature: domain Description: DZR Location: 161082 -161199 bp Feature: domain Description: DZR Location: 161283-161439 bp Feature: domain Description: DZR Location: 1612 83-161439 bp Feature: gene Location: 161574-162629 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161757-162273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161757-162 2 73 bp Feature: gene Location: 162613-162942 bp Feature: domain Description: HTH_XRE Location: 162649-162808 bp Feature: domain Description: HTH_XRE Location: 162 649-162 808 bp Feature: gene Location: 163069-163254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DZR (pfam12773), RVT-Retrons, HTH_XRE (smart00530)

Seq: WQCG01000005.1 Ruegeria atlantica strain HKCCD6212 NODE_5, whole genome shotgun sequence (286884 bp)
Overview 1 RT 1: 240351-246556 bp Neighborhood of RT #1 [240351, 246556] Dam KAP_NTPase KAP_NTPase RVT-UG28 S24_LexA-like Feature: gene Location: 240351-241163 bp Feature: domain Description: Dam Location: 240396-241149 bp Feature: domain Description: Dam Location: 2403 96-241149 bp Feature: gene Location: 241365-243221 bp Feature: domain Description: KAP_NTPase Location: 241434-241509 bp Feature: domain Description: KAP_NTPase Location: 24143 4-241509 bp Feature: domain Description: KAP_NTPase Location: 241713-241953 bp Feature: domain Description: KAP_NTPase Location: 241713 -241953 bp Feature: gene Location: 243506-245053 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 243782-244457 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 243 782-244457 bp Feature: gene Location: 245281-246192 bp Feature: domain Description: S24_LexA-like Location: 245920-246151 bp Feature: domain Description: S24_LexA-like Location: 245920-246151 bp Feature: gene Location: 246122-246556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), KAP_NTPase (pfam07693), RVT-UG28, S24_LexA-like (cd06529)