myRT

myRT report for GCA_013041605.1_ASM1304160v1

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Seq: JABEQC010000005.1 Vibrio plantisponsor strain LMG 24470 Scaffold5, whole genome shotgun sequence (305940 bp)
Overview 1 RT 1: 5669-9933 bp Neighborhood of RT #1 [5669, 9953] PRK11139 RVT_N RVT-GII GIIM PRK08719 AlpA Feature: gene Location: 5669-6574 bp Feature: domain Description: PRK11139 Location: 5675-6533 bp Feature: domain Description: PRK1 1 1 39 Location: 5675-6533 bp Feature: gene Location: 7437-7751 bp Feature: RT Description: RVT_N Location: 7527-7674 bp Feature: RT Description: RVT_N Location: 7527-7674 bp Feature: gene Location: 7748-8950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7814-8441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781 4-8441 bp Feature: domain Description: GIIM Note: maturase Location: 8504-8726 bp Feature: domain Description: GIIM Note: maturase Location: 8504-8726 bp Feature: gene Location: 9205-9651 bp Feature: domain Description: PRK08719 Location: 9208-9637 bp Feature: domain Description: PRK0871 9 Location: 9208-9637 bp Feature: gene Location: 9720-9953 bp Feature: domain Description: AlpA Location: 9750-9933 bp Feature: domain Description: AlpA Location: 9750-9933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK08719 (ribonuclease H; Reviewed), AlpA (COG3311)

Seq: JABEQC010000006.1 Vibrio plantisponsor strain LMG 24470 Scaffold6, whole genome shotgun sequence (275298 bp)
Overview 1 RT 1: 126794-132025 bp Neighborhood of RT #1 [126794, 132540] PHA01082 PHA01082 RVT-Retrons IV IV Zot Zot Feature: gene Location: 126794-127165 bp Feature: domain Description: PHA01082 Location: 126797-127139 bp Feature: domain Description: PHA01082 Location: 12 6797-12 7139 bp Feature: gene Location: 127302-127709 bp Feature: domain Description: PHA01082 Location: 127305-127662 bp Feature: domain Description: PHA01082 Location: 12 7305-12 7662 bp Feature: gene Location: 128271-130019 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128406-129027 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 8406-12 902 7 bp Feature: gene Location: 130022-131212 bp Feature: domain Description: IV Location: 130028-130280 bp Feature: domain Description: IV Location: 13002 8-1302 80 bp Feature: domain Description: IV Location: 130313-131198 bp Feature: domain Description: IV Location: 130313-131198 bp Feature: gene Location: 131212-132540 bp Feature: domain Description: Zot Location: 131227-131314 bp Feature: domain Description: Zot Location: 1312 2 7-131314 bp Feature: domain Description: Zot Location: 131659-132025 bp Feature: domain Description: Zot Location: 131659-132 02 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA01082 (putative transcription regulator), RVT-Retrons, IV (PHA00019), Zot (pfam05707)