myRT

myRT report for GCA_013048685.1_ASM1304868v1

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Seq: VHTC01000001.1 Vibrio sp. A8-1 NODE_1_length_218164_cov_31.685847, whole genome shotgun sequence (218164 bp)
Overview 1 RT 1: 142834-149113 bp Neighborhood of RT #1 [142834, 149124] EFP_modif_epmB SapB RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 142834-143856 bp Feature: domain Description: EFP_modif_epmB Location: 142882-143839 bp Feature: domain Description: EFP_modif_epmB Location: 1 42882-1 43839 bp Feature: gene Location: 144037-144507 bp Feature: domain Description: SapB Location: 144091-144478 bp Feature: domain Description: SapB Location: 1 44091 -1 44478 bp Feature: gene Location: 144724-146397 bp Feature: RT Description: RVT_N Location: 144775-145018 bp Feature: RT Description: RVT_N Location: 1 44775-1 4501 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145063-145708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45063-1 45708 bp Feature: domain Description: GIIM Note: maturase Location: 145762-145993 bp Feature: domain Description: GIIM Note: maturase Location: 1 45762-1 45993 bp Feature: domain Description: HNHc Note: nucleases Location: 146209-146371 bp Feature: domain Description: HNHc Note: nucleases Location: 1 46209-1 46371 bp Feature: gene Location: 147042-147236 bp Feature: gene Location: 147487-149124 bp Feature: domain Description: groEL Location: 147493-149113 bp Feature: domain Description: groEL Location: 1 47493-1 491 1 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFP_modif_epmB (TIGR03821), SapB (smart00741), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: VHTC01000032.1 Vibrio sp. A8-1 NODE_32_length_31593_cov_33.092957, whole genome shotgun sequence (31593 bp)
Overview 1 RT 1: 26280-31243 bp Neighborhood of RT #1 [26280, 31467] COG3886 SSL2 NERD RVT-GII GIIM Feature: gene Location: 26280-29207 bp Feature: domain Description: COG3886 Location: 26298-26847 bp Feature: domain Description: COG3886 Location: 2 62 98-2 6847 bp Feature: domain Description: SSL2 Location: 26916-28302 bp Feature: domain Description: SSL2 Location: 2 6916-2 8302 bp Feature: gene Location: 29303-30277 bp Feature: domain Description: NERD Location: 29360-29663 bp Feature: domain Description: NERD Location: 2 9360-2 9663 bp Feature: gene Location: 30616-31467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30619-30958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30619-30958 bp Feature: domain Description: GIIM Note: maturase Location: 31015-31243 bp Feature: domain Description: GIIM Note: maturase Location: 31015-312 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3886 (HKD family nuclease ), SSL2 (COG1061), NERD (pfam08378), RVT-GII, GIIM (pfam08388)

Seq: VHTC01000036.1 Vibrio sp. A8-1 NODE_36_length_30026_cov_27.664838, whole genome shotgun sequence (30026 bp)
Overview 1 RT 1: 27813-29897 bp Neighborhood of RT #1 [27813, 29935] PRK10826 RVT_N RVT-GII Feature: gene Location: 27813-28532 bp Feature: domain Description: PRK10826 Location: 27867-28485 bp Feature: domain Description: PRK10826 Location: 27867-28485 bp Feature: gene Location: 28898-29029 bp Feature: gene Location: 29228-29935 bp Feature: RT Description: RVT_N Location: 29318-29561 bp Feature: RT Description: RVT_N Location: 293 18-29561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29606-29897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29606-29897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10826 (hexitol phosphatase HxpB), RVT_N (pfam13655), RVT-GII

Seq: VHTC01000045.1 Vibrio sp. A8-1 NODE_45_length_20008_cov_41.705297, whole genome shotgun sequence (20008 bp)
Overview 1 RT 1: 5851-9262 bp Neighborhood of RT #1 [5851, 9262] HTH_17 HTH_23 HTH_33 RVT-GII COG3019 Feature: gene Location: 5851-6090 bp Feature: domain Description: HTH_17 Location: 5899-6064 bp Feature: domain Description: HTH_17 Location: 5899-6064 bp Feature: gene Location: 6641-7195 bp Feature: domain Description: HTH_23 Location: 6725-6842 bp Feature: domain Description: HTH_23 Location: 6725-684 2 bp Feature: domain Description: HTH_33 Location: 6941-7106 bp Feature: domain Description: HTH_33 Location: 694 1-7106 bp Feature: gene Location: 7201-8118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7207-7693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7207-7693 bp Feature: gene Location: 8245-8685 bp Feature: domain Description: COG3019 Location: 8260-8683 bp Feature: domain Description: COG3019 Location: 8260-8683 bp Feature: gene Location: 8705-9262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), HTH_23 (pfam13384), HTH_33 (pfam13592), RVT-GII, COG3019 (Uncharacterized conserved protein )

Seq: VHTC01000082.1 Vibrio sp. A8-1 NODE_82_length_1771_cov_173.832117, whole genome shotgun sequence (1771 bp)
Overview 1 RT 1: 37-1120 bp Neighborhood of RT #1 [37, 1347] RVT-GII GIIM Feature: gene Location: 37-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 3-868 bp Feature: domain Description: GIIM Note: maturase Location: 916-1120 bp Feature: domain Description: GIIM Note: maturase Location: 916-1120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VHTC01000009.1 Vibrio sp. A8-1 NODE_9_length_137822_cov_30.902051, whole genome shotgun sequence (137822 bp)
Overview 1 RT 1: 6327-10259 bp 2 RT 2: 23083-26837 bp Neighborhood of RT #1 [6327, 10774] GDPD_EcUgpQ_like CSP_CDS RVT-Retrons Peptidase_C14 Neighborhood of RT #2 [23083, 26845] RVT-GII RVT-CRISPR-like HTH_1 PBP2_CrgA_like_1 adh_III_F_hyde Feature: gene Location: 6327-7073 bp Feature: domain Description: GDPD_EcUgpQ_like Location: 6342-7032 bp Feature: domain Description: GDPD_EcUgpQ_like Location: 6 342-7032 bp Feature: gene Location: 7439-7648 bp Feature: domain Description: CSP_CDS Location: 7454-7640 bp Feature: domain Description: CSP_CDS Location: 7454-76 40 bp Feature: gene Location: 7649-8836 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7793-8366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7793-836 6 bp Feature: gene Location: 8875-9087 bp Feature: gene Location: 9827-10774 bp Feature: domain Description: Peptidase_C14 Location: 9833-10259 bp Feature: domain Description: Peptidase_C14 Location: 9833-10259 bp Feature: gene Location: 23083-23298 bp Feature: gene Location: 23449-23658 bp Feature: gene Location: 23741-24301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23954-24296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23954-24296 bp Feature: gene Location: 24335-24496 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 24341-24485 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 24341-24485 bp Feature: gene Location: 24639-25508 bp Feature: domain Description: HTH_1 Location: 24669-24828 bp Feature: domain Description: HTH_1 Location: 246 6 9-24828 bp Feature: domain Description: PBP2_CrgA_like_1 Location: 24915-25503 bp Feature: domain Description: PBP2_CrgA_like_1 Location: 24915-25503 bp Feature: gene Location: 25697-26845 bp Feature: domain Description: adh_III_F_hyde Location: 25736-26837 bp Feature: domain Description: adh_III_F_hyde Location: 25736 -26 837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD_EcUgpQ_like (cd08562), CSP_CDS (cd04458), RVT-Retrons, Peptidase_C14 (pfam00656), RVT-GII, RVT-CRISPR, HTH_1 (pfam00126), PBP2_CrgA_like_1 (cd08470), adh_III_F_hyde (TIGR02818)