myRT

myRT report for GCA_013048705.1_ASM1304870v1

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Seq: VHSI01000016.1 Vibrio sp. A11 NODE_16_length_70084_cov_58.556170, whole genome shotgun sequence (70084 bp)
Overview 1 RT 1: 59101-64802 bp Neighborhood of RT #1 [59101, 64813] SapB RAYT RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 59101-59571 bp Feature: domain Description: SapB Location: 59155-59542 bp Feature: domain Description: SapB Location: 591 55-59542 bp Feature: gene Location: 59665-60102 bp Feature: domain Description: RAYT Location: 59674-60067 bp Feature: domain Description: RAYT Location: 59674-60067 bp Feature: gene Location: 60413-62086 bp Feature: domain Description: RVT_N Location: 60464-60707 bp Feature: domain Description: RVT_N Location: 60464-60707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60752-61397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60752-61 397 bp Feature: domain Description: GIIM Note: maturase Location: 61451-61682 bp Feature: domain Description: GIIM Note: maturase Location: 61 451 -61 682 bp Feature: domain Description: HNHc Note: nucleases Location: 61898-62060 bp Feature: domain Description: HNHc Note: nucleases Location: 61 898-62060 bp Feature: gene Location: 62731-62925 bp Feature: gene Location: 63176-64813 bp Feature: domain Description: groEL Location: 63182-64802 bp Feature: domain Description: groEL Location: 631 82-64802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SapB (smart00741), RAYT (COG1943), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: VHSI01000019.1 Vibrio sp. A11 NODE_19_length_35364_cov_98.380963, whole genome shotgun sequence (35364 bp)
Overview 1 RT 1: 10741-14129 bp Neighborhood of RT #1 [10741, 14155] COG3019 RVT-GII HTH_23 HTH_33 HTH_17 Feature: gene Location: 10741-11301 bp Feature: gene Location: 11321-11761 bp Feature: domain Description: COG3019 Location: 11336-11759 bp Feature: domain Description: COG3019 Location: 11336-11759 bp Feature: gene Location: 11888-12805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11894-12380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11894-12 380 bp Feature: gene Location: 12811-13365 bp Feature: domain Description: HTH_23 Location: 12895-13012 bp Feature: domain Description: HTH_2 3 Location: 12 895-13012 bp Feature: domain Description: HTH_33 Location: 13111-13276 bp Feature: domain Description: HTH_33 Location: 13111-132 76 bp Feature: gene Location: 13916-14155 bp Feature: domain Description: HTH_17 Location: 13964-14129 bp Feature: domain Description: HTH_17 Location: 13964-1412 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3019 (Uncharacterized conserved protein ), RVT-GII, HTH_23 (pfam13384), HTH_33 (pfam13592), HTH_17 (pfam12728)

Seq: VHSI01000002.1 Vibrio sp. A11 NODE_2_length_412665_cov_54.262201, whole genome shotgun sequence (412665 bp)
Overview 1 RT 1: 338741-346533 bp Neighborhood of RT #1 [338741, 346538] PRK09692 RVT-UG2 COG0610 RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 338741-339985 bp Feature: domain Description: PRK09692 Location: 338744-339977 bp Feature: domain Description: PRK09692 Location: 3 3 8744-3 3 9977 bp Feature: gene Location: 340073-340270 bp Feature: gene Location: 340611-342266 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 340986-341967 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 40986-3 41967 bp Feature: gene Location: 342323-345385 bp Feature: domain Description: COG0610 Location: 342332-344555 bp Feature: domain Description: COG0610 Location: 3 423 3 2-3 44555 bp Feature: gene Location: 345396-346538 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 345417-345891 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3 45417-3 45891 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 345981-346533 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3 45981-3 4653 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_SonII-TRD2-CR2_like (cd17246)

Seq: VHSI01000046.1 Vibrio sp. A11 NODE_46_length_1893_cov_455.722537, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 547-1630 bp Neighborhood of RT #1 [547, 1857] RVT-GII GIIM Feature: gene Location: 547-1857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1378 bp Feature: domain Description: GIIM Note: maturase Location: 1426-1630 bp Feature: domain Description: GIIM Note: maturase Location: 14 26-1630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)