myRT

myRT report for GCA_013048765.1_ASM1304876v1

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Seq: VHSM01000029.1 Vibrio sp. B4-12 NODE_29_length_2414_cov_5.525579, whole genome shotgun sequence (2414 bp)
Overview 1 RT 1: 2-2215 bp Neighborhood of RT #1 [2, 2215] dxs RVT-GII GIIM Feature: gene Location: 2-382 bp Feature: domain Description: dxs Location: 5-374 bp Feature: domain Description: dxs Location: 5-374 bp Feature: gene Location: 427-1737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1 258 bp Feature: domain Description: GIIM Note: maturase Location: 1306-1510 bp Feature: domain Description: GIIM Note: maturase Location: 1 306-1 51 0 bp Feature: gene Location: 1913-2215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dxs (TIGR00204), RVT-GII, GIIM (pfam08388)

Seq: VHSM01000003.1 Vibrio sp. B4-12 NODE_3_length_351702_cov_38.536216, whole genome shotgun sequence (351702 bp)
Overview 1 RT 1: 175206-185722 bp Neighborhood of RT #1 [175206, 185754] RVT-UG1 DUF4145 HsdR RMtype1_S_EcoKI-TRD1-CR1_like RMtype1_S_EcoKI-TRD1-CR1_like Feature: gene Location: 175206-176615 bp Feature: gene Location: 176702-177142 bp Feature: gene Location: 177151-180828 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 177763-178225 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 177763-1782 2 5 bp Feature: gene Location: 180841-184485 bp Feature: domain Description: DUF4145 Location: 180967-181246 bp Feature: domain Description: DUF4145 Location: 180967-1812 46 bp Feature: domain Description: HsdR Location: 181570-184402 bp Feature: domain Description: HsdR Location: 181570-184402 bp Feature: gene Location: 184534-185754 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 184543-185107 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 184543-185107 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 185398-185722 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 185398-18572 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, DUF4145 (pfam13643), HsdR (COG4096), RMtype1_S_EcoKI-TRD1-CR1_like (cd17252)