myRT

myRT report for GCA_013048825.1_ASM1304882v1

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Seq: VMQP01000017.1 Vibrio sp. 12-2(3-a) NODE_17_length_3644_cov_42.535684, whole genome shotgun sequence (3644 bp)
Overview 1 RT 1: 416-2970 bp Neighborhood of RT #1 [416, 2978] RVT-Retrons ParE ParD_antitoxin Feature: gene Location: 416-1378 bp Feature: gene Location: 1411-2307 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1477-2071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 477-2071 bp Feature: gene Location: 2431-2730 bp Feature: domain Description: ParE Location: 2434-2716 bp Feature: domain Description: ParE Location: 2434-271 6 bp Feature: gene Location: 2727-2978 bp Feature: domain Description: ParD_antitoxin Location: 2739-2970 bp Feature: domain Description: ParD_antitoxin Location: 2739-2970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ParE (COG3668), ParD_antitoxin (pfam03693)

Seq: VMQP01000002.1 Vibrio sp. 12-2(3-a) NODE_2_length_834684_cov_40.836306, whole genome shotgun sequence (834684 bp)
Overview 1 RT 1: 456583-460213 bp Neighborhood of RT #1 [456583, 460221] HTH_XRE RVT-Retrons MgsA YqdH Feature: gene Location: 456583-456930 bp Feature: gene Location: 456970-457275 bp Feature: domain Description: HTH_XRE Location: 456985-457147 bp Feature: domain Description: HTH_XRE Location: 456985-457147 bp Feature: gene Location: 457256-458215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 457430-457985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 457430-457985 bp Feature: gene Location: 458440-458895 bp Feature: domain Description: MgsA Location: 458464-458881 bp Feature: domain Description: MgsA Location: 458464-458881 bp Feature: gene Location: 459073-460221 bp Feature: domain Description: YqdH Location: 459079-460213 bp Feature: domain Description: YqdH Location: 459079-4602 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, MgsA (COG1803), YqdH (COG1979)

Seq: VMQP01000003.1 Vibrio sp. 12-2(3-a) NODE_3_length_520078_cov_41.301275, whole genome shotgun sequence (520078 bp)
Overview 1 RT 1: 158714-162370 bp 2 RT 2: 383191-391099 bp Neighborhood of RT #1 [158714, 162370] FlgN RVT-Retrons Neighborhood of RT #2 [383191, 391110] DnaG PRK05658 RVT-Retrons AraC GyrI-like Feature: gene Location: 158714-159151 bp Feature: domain Description: FlgN Location: 158738-159083 bp Feature: domain Description: FlgN Location: 15873 8-159083 bp Feature: gene Location: 159647-159775 bp Feature: gene Location: 159899-160930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160130-160673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16013 0-160673 bp Feature: gene Location: 161175-161519 bp Feature: gene Location: 161519-162370 bp Feature: gene Location: 383191-384945 bp Feature: domain Description: DnaG Location: 383206-384925 bp Feature: domain Description: DnaG Location: 3 83 206-3 84925 bp Feature: gene Location: 385043-386911 bp Feature: domain Description: PRK05658 Location: 385049-386909 bp Feature: domain Description: PRK05658 Location: 3 85049-3 86909 bp Feature: gene Location: 387583-388533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 387688-388279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 87688-3 88279 bp Feature: gene Location: 388530-389501 bp Feature: gene Location: 390205-391110 bp Feature: domain Description: AraC Location: 390265-390571 bp Feature: domain Description: AraC Location: 3 90265-3 90571 bp Feature: domain Description: GyrI-like Location: 390658-391099 bp Feature: domain Description: GyrI-like Location: 3 90658-3 91099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlgN (pfam05130), RVT-Retrons, DnaG (COG0358), PRK05658 (RNA polymerase sigma factor RpoD; Validated), AraC (COG2207), GyrI-like (pfam06445)

Seq: VMQP01000005.1 Vibrio sp. 12-2(3-a) NODE_5_length_252322_cov_42.787395, whole genome shotgun sequence (252322 bp)
Overview 1 RT 1: 150762-157000 bp Neighborhood of RT #1 [150762, 157011] EFP_modif_epmB DUF2188 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 150762-151784 bp Feature: domain Description: EFP_modif_epmB Location: 150810-151767 bp Feature: domain Description: EFP_modif_epmB Location: 150810-151767 bp Feature: gene Location: 152173-152394 bp Feature: domain Description: DUF2188 Location: 152188-152365 bp Feature: domain Description: DUF2188 Location: 152188-152365 bp Feature: gene Location: 152580-154265 bp Feature: RT Description: RVT_N Location: 152637-152880 bp Feature: RT Description: RVT_N Location: 152637-152880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152925-153570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152925-153570 bp Feature: domain Description: GIIM Note: maturase Location: 153621-153855 bp Feature: domain Description: GIIM Note: maturase Location: 153621-153855 bp Feature: domain Description: HNHc Note: nucleases Location: 154071-154233 bp Feature: domain Description: HNHc Note: nucleases Location: 154 071-154 233 bp Feature: gene Location: 154439-154711 bp Feature: gene Location: 155374-157011 bp Feature: domain Description: groEL Location: 155380-157000 bp Feature: domain Description: groEL Location: 155380-157000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EFP_modif_epmB (TIGR03821), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)