myRT

myRT report for GCA_013072865.1_ASM1307286v1

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Seq: JABEZC010000007.1 Escherichia coli strain GZB8C53M GZB8C53M_contig_106_length_2272_cov_81.662937, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEZC010000138.1 Escherichia coli strain GZB8C53M GZB8C53M_contig_43_length_28363_cov_17.763246, whole genome shotgun sequence (28363 bp)
Overview 1 RT 1: 2752-5908 bp Neighborhood of RT #1 [2752, 5925] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 2752-3255 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2863-3253 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2 863-32 53 bp Feature: gene Location: 3174-3449 bp Feature: domain Description: InsA Location: 3177-3441 bp Feature: domain Description: InsA Location: 3177-3441 bp Feature: gene Location: 3601-4611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607-4219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3607-42 19 bp Feature: gene Location: 4586-5188 bp Feature: gene Location: 5242-5925 bp Feature: domain Description: PRK10276 Location: 5545-5908 bp Feature: domain Description: PRK102 76 Location: 5545-5908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JABEZC010000165.1 Escherichia coli strain GZB8C53M GZB8C53M_contig_4_length_310195_cov_16.007137, whole genome shotgun sequence (310195 bp)
Overview 1 RT 1: 1440-4910 bp Neighborhood of RT #1 [1440, 5017] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1440-1742 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1449-1701 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1449-1701 bp Feature: gene Location: 1926-2171 bp Feature: gene Location: 2197-3129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2299-2893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2299-2893 bp Feature: gene Location: 3131-4117 bp Feature: gene Location: 4745-5017 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JABEZC010000209.1 Escherichia coli strain GZB8C53M GZB8C53M_contig_8_length_181409_cov_15.426038, whole genome shotgun sequence (181409 bp)
Overview 1 RT 1: 153157-157440 bp Neighborhood of RT #1 [153157, 157448] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 153157-154062 bp Feature: gene Location: 154200-154391 bp Feature: gene Location: 154548-155087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154878-154956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 878-154 956 bp Feature: gene Location: 155115-155636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155121-155403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155121-1554 03 bp Feature: domain Description: GIIM Note: maturase Location: 155451-155631 bp Feature: domain Description: GIIM Note: maturase Location: 1554 51-155631 bp Feature: gene Location: 155958-156146 bp Feature: gene Location: 156186-157448 bp Feature: domain Description: YesM Location: 156699-157440 bp Feature: domain Description: YesM Location: 156699-1574 4 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)