myRT

myRT report for GCA_013073325.1_ASM1307332v1

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Seq: JABEZI010000140.1 Escherichia coli strain GZB8C26M GZB8C26M_contig_42_length_29049_cov_14.740751, whole genome shotgun sequence (29049 bp)
Overview 1 RT 1: 22439-25610 bp Neighborhood of RT #1 [22439, 25612] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 22439-23122 bp Feature: domain Description: PRK10276 Location: 22742-23105 bp Feature: domain Description: PRK1 0276 Location: 22742-231 05 bp Feature: gene Location: 23176-23778 bp Feature: gene Location: 23753-24763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23759-24371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23759-24371 bp Feature: gene Location: 24886-25098 bp Feature: gene Location: 25109-25612 bp Feature: domain Description: DDE_Tnp_IS1 Location: 25220-25610 bp Feature: domain Description: DDE_Tnp_IS1 Location: 25220-2561 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: JABEZI010000148.1 Escherichia coli strain GZB8C26M GZB8C26M_contig_4_length_310195_cov_16.269970, whole genome shotgun sequence (310195 bp)
Overview 1 RT 1: 1440-4910 bp Neighborhood of RT #1 [1440, 5017] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1440-1742 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1449-1701 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1449-1701 bp Feature: gene Location: 1926-2171 bp Feature: gene Location: 2197-3129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2299-2893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 99-2 893 bp Feature: gene Location: 3131-4117 bp Feature: gene Location: 4745-5017 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JABEZI010000191.1 Escherichia coli strain GZB8C26M GZB8C26M_contig_8_length_181409_cov_15.971404, whole genome shotgun sequence (181409 bp)
Overview 1 RT 1: 23962-28253 bp Neighborhood of RT #1 [23962, 28253] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23962-25224 bp Feature: domain Description: YesM Location: 24475-25216 bp Feature: domain Description: YesM Location: 24475-25216 bp Feature: gene Location: 25254-25424 bp Feature: gene Location: 25774-26295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: gene Location: 26323-26862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653-26731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653 -2673 1 bp Feature: gene Location: 26893-27090 bp Feature: gene Location: 27348-28253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JABEZI010000199.1 Escherichia coli strain GZB8C26M GZB8C26M_contig_97_length_2272_cov_86.543124, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)