myRT

myRT report for GCA_013073485.1_ASM1307348v1

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Seq: WEPV01000028.1 Escherichia coli strain P0073V1 73-1_merged_28, whole genome shotgun sequence (51181 bp)
Overview 1 RT 1: 3251-9667 bp Neighborhood of RT #1 [3251, 9675] TIGR02646 COG3950 RVT-Retrons proA proB Feature: gene Location: 3251-4027 bp Feature: domain Description: TIGR02646 Location: 3323-3851 bp Feature: domain Description: TIGR02646 Location: 3323-3851 bp Feature: gene Location: 4011-5639 bp Feature: domain Description: COG3950 Location: 4194-5373 bp Feature: domain Description: COG3950 Location: 41 94-5373 bp Feature: gene Location: 5640-6578 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5739-6336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5739-6336 bp Feature: gene Location: 7220-8473 bp Feature: domain Description: proA Location: 7247-8438 bp Feature: domain Description: proA Location: 7247-8438 bp Feature: gene Location: 8485-9675 bp Feature: domain Description: proB Location: 8587-9667 bp Feature: domain Description: proB Location: 8587-9667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, proA (TIGR00407), proB (TIGR01027)

Seq: WEPV01000039.1 Escherichia coli strain P0073V1 73-1_merged_39, whole genome shotgun sequence (29480 bp)
Overview 1 RT 1: 4927-8259 bp Neighborhood of RT #1 [4927, 8291] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 4927-5556 bp Feature: domain Description: PinE Location: 5002-5551 bp Feature: domain Description: PinE Location: 5002 -5551 bp Feature: gene Location: 5656-6057 bp Feature: gene Location: 6266-7618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6587-7205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6587-72 05 bp Feature: domain Description: GIIM Note: maturase Location: 7253-7484 bp Feature: domain Description: GIIM Note: maturase Location: 72 53-7484 bp Feature: gene Location: 7689-8039 bp Feature: gene Location: 8094-8291 bp Feature: domain Description: PRK09413 Location: 8097-8259 bp Feature: domain Description: PRK09413 Location: 8097-82 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: WEPV01000098.1 Escherichia coli strain P0073V1 73-1_merged_98, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 93-1230 bp Neighborhood of RT #1 [93, 1475] RVT-GII GIIM Feature: gene Location: 93-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1230 bp Feature: domain Description: GIIM Note: maturase Location: 103 2-123 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)