myRT

myRT report for GCA_013073495.1_ASM1307349v1

Download annotations/find similar RTs

Seq: JABEZQ010000224.1 Escherichia coli strain GZB8C2M GZB8C2M_contig_45_length_32923_cov_15.049213, whole genome shotgun sequence (32923 bp)
Overview 1 RT 1: 3144-9387 bp Neighborhood of RT #1 [3144, 9524] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 3144-3410 bp Feature: domain Description: Phage_integrase Location: 3210-3306 bp Feature: domain Description: Phage_integrase Location: 321 0-3306 bp Feature: gene Location: 3493-3963 bp Feature: gene Location: 4310-7519 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4838-5327 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4838-5327 bp Feature: domain Description: nitrilase Location: 6833-7430 bp Feature: domain Description: nitrilase Location: 6833-7430 bp Feature: gene Location: 7814-8617 bp Feature: domain Description: AbiEi_3_N Location: 7847-8108 bp Feature: domain Description: AbiEi_3_N Location: 7847-81 08 bp Feature: domain Description: AbiEi_3 Location: 8120-8576 bp Feature: domain Description: AbiEi_3 Location: 81 20-8576 bp Feature: gene Location: 8604-9524 bp Feature: domain Description: AbiEii Location: 8646-9387 bp Feature: domain Description: AbiEii Location: 8646-9387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JABEZQ010000254.1 Escherichia coli strain GZB8C2M GZB8C2M_contig_72_length_13722_cov_15.338654, whole genome shotgun sequence (13722 bp)
Overview 1 RT 1: 10253-13465 bp Neighborhood of RT #1 [10253, 13530] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10253-10423 bp Feature: gene Location: 10451-10867 bp Feature: domain Description: PHA02517 Location: 10454-10859 bp Feature: domain Description: PHA02 517 Location: 10454-10859 bp Feature: gene Location: 10990-12513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 63-11995 bp Feature: domain Description: GIIM Note: maturase Location: 12070-12268 bp Feature: domain Description: GIIM Note: maturase Location: 12 070-12 2 68 bp Feature: gene Location: 12467-12892 bp Feature: gene Location: 13105-13530 bp Feature: domain Description: PHA02517 Location: 13129-13465 bp Feature: domain Description: PHA02 517 Location: 1312 9-13465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JABEZQ010000257.1 Escherichia coli strain GZB8C2M GZB8C2M_contig_75_length_11437_cov_7.748099, whole genome shotgun sequence (11437 bp)
Overview 1 RT 1: 468-6958 bp Neighborhood of RT #1 [468, 6958] PRK11447 RAYT RVT-GII YkfC GIIM Feature: gene Location: 468-3941 bp Feature: domain Description: PRK11447 Location: 471-3936 bp Feature: domain Description: PRK11447 Location: 471-3 93 6 bp Feature: gene Location: 4288-4827 bp Feature: domain Description: RAYT Location: 4366-4729 bp Feature: domain Description: RAYT Location: 43 66-4729 bp Feature: gene Location: 4982-6223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5270-5705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5270-5705 bp Feature: domain Description: YkfC Location: 5705-5789 bp Feature: domain Description: YkfC Location: 5705-5789 bp Feature: domain Description: GIIM Note: maturase Location: 5831-6062 bp Feature: domain Description: GIIM Note: maturase Location: 583 1-6062 bp Feature: gene Location: 6254-6451 bp Feature: gene Location: 6815-6958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11447 (cellulose synthase subunit BcsC; Provisional), RAYT (COG1943), RVT-GII, YkfC (COG3344), GIIM (pfam08388)