myRT

myRT report for GCA_013073545.1_ASM1307354v1

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Seq: WEQK01000111.1 Escherichia coli strain E13V1D E13V1D_merged_111, whole genome shotgun sequence (2590 bp)
Overview 1 RT 1: 3-2463 bp Neighborhood of RT #1 [3, 2498] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-257 bp Feature: gene Location: 369-551 bp Feature: gene Location: 831-2498 bp Feature: RT Description: RVT_N Location: 879-1116 bp Feature: RT Description: RVT_N Location: 879-1 1 1 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1167-1809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 67-1 809 bp Feature: domain Description: GIIM Note: maturase Location: 1860-2094 bp Feature: domain Description: GIIM Note: maturase Location: 1 860-2094 bp Feature: domain Description: HNHc Note: nucleases Location: 2304-2463 bp Feature: domain Description: HNHc Note: nucleases Location: 2304-2463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WEQK01000116.1 Escherichia coli strain E13V1D E13V1D_merged_116, whole genome shotgun sequence (2409 bp)
Overview 1 RT 1: 152-2340 bp Neighborhood of RT #1 [152, 2340] RVT-GII GIIM Feature: gene Location: 152-1675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-1157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 5-1157 bp Feature: domain Description: GIIM Note: maturase Location: 1232-1430 bp Feature: domain Description: GIIM Note: maturase Location: 12 32 -1430 bp Feature: gene Location: 1969-2340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WEQK01000048.1 Escherichia coli strain E13V1D E13V1D_merged_48, whole genome shotgun sequence (29469 bp)
Overview 1 RT 1: 2-2098 bp Neighborhood of RT #1 [2, 2098] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII group_II_RT_mat Feature: gene Location: 2-835 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8-647 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8-647 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 701-812 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 701-812 bp Feature: gene Location: 869-1561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887-1499 bp Feature: gene Location: 1610-1828 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1727-1820 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1727-1820 bp Feature: gene Location: 1886-2098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII