myRT

myRT report for GCA_013073815.1_ASM1307381v1

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Seq: WEPX01000024.1 Escherichia coli strain P307V4 307-4_merged_24, whole genome shotgun sequence (87501 bp)
Overview 1 RT 1: 16875-22358 bp Neighborhood of RT #1 [16875, 22363] lnt PRK09413 RVT-GII GIIM PinE Feature: gene Location: 16875-18086 bp Feature: domain Description: lnt Location: 17241-17904 bp Feature: domain Description: lnt Location: 1 7241 -1 7904 bp Feature: gene Location: 18980-19177 bp Feature: domain Description: PRK09413 Location: 18983-19145 bp Feature: domain Description: PRK0941 3 Location: 1 8983-1 91 45 bp Feature: gene Location: 19653-21005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19974-20592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9974-20592 bp Feature: domain Description: GIIM Note: maturase Location: 20640-20871 bp Feature: domain Description: GIIM Note: maturase Location: 20640-20871 bp Feature: gene Location: 21215-21616 bp Feature: gene Location: 21716-22363 bp Feature: domain Description: PinE Location: 21809-22358 bp Feature: domain Description: PinE Location: 21 809-22358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lnt (TIGR00546), PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: WEPX01000008.1 Escherichia coli strain P307V4 307-4_merged_8, whole genome shotgun sequence (196153 bp)
Overview 1 RT 1: 33636-37515 bp Neighborhood of RT #1 [33636, 37520] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 33636-34352 bp Feature: domain Description: rph Location: 33639-34347 bp Feature: domain Description: rph Location: 33639-34347 bp Feature: gene Location: 34403-35059 bp Feature: domain Description: pyrE Location: 34421-35054 bp Feature: domain Description: pyrE Location: 3442 1-35054 bp Feature: gene Location: 35356-36315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35491-36040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35491-36040 bp Feature: gene Location: 36359-36955 bp Feature: domain Description: slmA Location: 36365-36941 bp Feature: domain Description: slmA Location: 36365-36941 bp Feature: gene Location: 37062-37520 bp Feature: domain Description: dut Location: 37068-37515 bp Feature: domain Description: dut Location: 37068-37515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)