myRT

myRT report for GCA_013074075.1_ASM1307407v1

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Seq: WEQS01000002.1 Escherichia coli strain E25V1B E25V1B_merged_2, whole genome shotgun sequence (295701 bp)
Overview 1 RT 1: 288600-292489 bp Neighborhood of RT #1 [288600, 292494] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 288600-288953 bp Feature: gene Location: 289312-289509 bp Feature: gene Location: 289678-290112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289870-290086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289870-290086 bp Feature: gene Location: 290085-290936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290088-290496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290088-290496 bp Feature: domain Description: GIIM Note: maturase Location: 290544-290766 bp Feature: domain Description: GIIM Note: maturase Location: 290544-290766 bp Feature: gene Location: 291114-291332 bp Feature: gene Location: 291463-292494 bp Feature: domain Description: LacI Location: 291505-291640 bp Feature: domain Description: LacI Location: 291 505-291 640 bp Feature: domain Description: PBP1_GntR Location: 291679-292489 bp Feature: domain Description: PBP1 _GntR Location: 291 679-292489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: WEQS01000024.1 Escherichia coli strain E25V1B E25V1B_merged_24, whole genome shotgun sequence (85606 bp)
Overview 1 RT 1: 77179-80643 bp Neighborhood of RT #1 [77179, 80768] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 77179-77577 bp Feature: gene Location: 77750-77932 bp Feature: gene Location: 78212-79879 bp Feature: RT Description: RVT_N Location: 78260-78497 bp Feature: RT Description: RVT_N Location: 782 60-78497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78548-79190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78548-79190 bp Feature: domain Description: GIIM Note: maturase Location: 79241-79475 bp Feature: domain Description: GIIM Note: maturase Location: 792 41-79475 bp Feature: domain Description: HNHc Note: nucleases Location: 79685-79844 bp Feature: domain Description: HNHc Note: nucleases Location: 79685-79844 bp Feature: gene Location: 79992-80294 bp Feature: gene Location: 80346-80768 bp Feature: domain Description: DUF1380 Location: 80349-80643 bp Feature: domain Description: DUF1380 Location: 80349-80643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: WEQS01000045.1 Escherichia coli strain E25V1B E25V1B_merged_45, whole genome shotgun sequence (30396 bp)
Overview 1 RT 1: 26776-30135 bp Neighborhood of RT #1 [26776, 30140] PRK09413 RVT-GII RVT-GII GIIM PinE Feature: gene Location: 26776-26973 bp Feature: domain Description: PRK09413 Location: 26779-26941 bp Feature: domain Description: PRK09413 Location: 26779-26941 bp Feature: gene Location: 27028-27378 bp Feature: gene Location: 27449-27862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27770-27857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27770-27857 bp Feature: gene Location: 27926-28801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27932-28388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2793 2-283 88 bp Feature: domain Description: GIIM Note: maturase Location: 28436-28667 bp Feature: domain Description: GIIM Note: maturase Location: 2843 6-28667 bp Feature: gene Location: 29010-29411 bp Feature: gene Location: 29511-30140 bp Feature: domain Description: PinE Location: 29586-30135 bp Feature: domain Description: PinE Location: 29586-3 013 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: WEQS01000047.1 Escherichia coli strain E25V1B E25V1B_merged_47, whole genome shotgun sequence (22942 bp)
Overview 1 RT 1: 4734-8374 bp Neighborhood of RT #1 [4734, 8541] InsE PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 4734-5036 bp Feature: domain Description: InsE Location: 4773-5022 bp Feature: domain Description: InsE Location: 4 773-5022 bp Feature: gene Location: 5092-5517 bp Feature: domain Description: PHA02517 Location: 5116-5452 bp Feature: domain Description: PHA02517 Location: 5116-54 52 bp Feature: gene Location: 6109-7632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6382-7114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6382-7114 bp Feature: domain Description: GIIM Note: maturase Location: 7189-7387 bp Feature: domain Description: GIIM Note: maturase Location: 7189-7387 bp Feature: gene Location: 7785-8027 bp Feature: domain Description: PHA02517 Location: 7788-8025 bp Feature: domain Description: PHA02517 Location: 7788-8025 bp Feature: gene Location: 8128-8541 bp Feature: domain Description: COG2085 Location: 8227-8374 bp Feature: domain Description: COG2085 Location: 8227-8374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )