myRT

myRT report for GCA_013074275.1_ASM1307427v1

Download annotations/find similar RTs

Seq: WERJ01000003.1 Escherichia coli strain K40V1 K401_merged_3, whole genome shotgun sequence (330122 bp)
Overview 1 RT 1: 187591-191946 bp Neighborhood of RT #1 [187591, 191969] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 187591-187806 bp Feature: gene Location: 187897-188178 bp Feature: domain Description: HTH_XRE Location: 187912-188077 bp Feature: domain Description: HTH_XRE Location: 1 8791 2-1 88077 bp Feature: gene Location: 188171-189271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 188312-188864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8831 2-1 88864 bp Feature: gene Location: 189348-190850 bp Feature: domain Description: PRK13889 Location: 189351-189930 bp Feature: domain Description: PRK1 3889 Location: 1 89351 -1 89930 bp Feature: gene Location: 191658-191969 bp Feature: domain Description: TraD Location: 191772-191946 bp Feature: domain Description: TraD Location: 1 91 772-1 91 946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: WERJ01000074.1 Escherichia coli strain K40V1 K401_merged_74, whole genome shotgun sequence (2431 bp)
Overview 1 RT 1: 92-2363 bp Neighborhood of RT #1 [92, 2428] RVT-GII GIIM PHA02517 Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172 -1370 bp Feature: gene Location: 2207-2428 bp Feature: domain Description: PHA02517 Location: 2210-2363 bp Feature: domain Description: PHA02 517 Location: 2 2 10-2 363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)