myRT

myRT report for GCA_013074305.1_ASM1307430v1

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Seq: WERH01000065.1 Escherichia coli strain K38V1 K381_merged_65, whole genome shotgun sequence (14840 bp)
Overview 1 RT 1: 112-3186 bp Neighborhood of RT #1 [112, 3218] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 112-483 bp Feature: domain Description: PinE Location: 118-478 bp Feature: domain Description: PinE Location: 1 1 8-478 bp Feature: gene Location: 583-984 bp Feature: gene Location: 1193-2545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1514-2132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 4-21 32 bp Feature: domain Description: GIIM Note: maturase Location: 2180-2411 bp Feature: domain Description: GIIM Note: maturase Location: 21 80-241 1 bp Feature: gene Location: 2616-2966 bp Feature: gene Location: 3021-3218 bp Feature: domain Description: PRK09413 Location: 3024-3186 bp Feature: domain Description: PRK0941 3 Location: 3024-31 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: WERH01000092.1 Escherichia coli strain K38V1 K381_merged_92, whole genome shotgun sequence (6715 bp)
Overview 1 RT 1: 2288-6648 bp Neighborhood of RT #1 [2288, 6713] DDE_Tnp_IS66 DDE_Tnp_IS66_C PRK10554 RVT-GII PHA02517 Feature: gene Location: 2288-2635 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2297-2480 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 97-2 480 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2501-2612 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 501-2 612 bp Feature: gene Location: 3019-4116 bp Feature: domain Description: PRK10554 Location: 3067-4114 bp Feature: domain Description: PRK10554 Location: 3067-4114 bp Feature: gene Location: 4554-5885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4827-5559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 7-5559 bp Feature: gene Location: 5839-6264 bp Feature: gene Location: 6477-6713 bp Feature: domain Description: PHA02517 Location: 6480-6648 bp Feature: domain Description: PHA02 517 Location: 6480-6648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK10554 (outer membrane porin protein C; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)