myRT

myRT report for GCA_013111245.1_ASM1311124v1

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Seq: WYCQ01000018.1 Vibrio cholerae strain EDC_692 732_Vc_EDC_692_contigs_EDC692_15, whole genome shotgun sequence (85467 bp)
Overview 1 RT 1: 30528-36252 bp Neighborhood of RT #1 [30528, 36252] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 30528-32162 bp Feature: domain Description: groEL Location: 30534-32157 bp Feature: domain Description: groEL Location: 30534-321 57 bp Feature: gene Location: 32684-32845 bp Feature: gene Location: 33258-34958 bp Feature: RT Description: RVT_N Location: 33330-33573 bp Feature: RT Description: RVT_N Location: 33330-33573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33618-34263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3361 8-34263 bp Feature: domain Description: GIIM Note: maturase Location: 34314-34548 bp Feature: domain Description: GIIM Note: maturase Location: 3431 4-34548 bp Feature: domain Description: HNHc Note: nucleases Location: 34764-34926 bp Feature: domain Description: HNHc Note: nucleases Location: 34764-34926 bp Feature: gene Location: 35144-35365 bp Feature: domain Description: DUF2188 Location: 35159-35336 bp Feature: domain Description: DUF21 88 Location: 351 59-35336 bp Feature: gene Location: 35692-36252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)

Seq: WYCQ01000014.1 Vibrio cholerae strain EDC_692 732_Vc_EDC_692_contigs_EDC692_6, whole genome shotgun sequence (139264 bp)
Overview 1 RT 1: 233-4554 bp Neighborhood of RT #1 [233, 4574] RVT-Retrons AAA_15 AAA_15 Hypoth_Ymh Feature: gene Location: 233-1333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 377-932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 377-932 bp Feature: gene Location: 1509-3626 bp Feature: domain Description: AAA_15 Location: 1512-1929 bp Feature: domain Description: AAA_15 Location: 1512 -192 9 bp Feature: domain Description: AAA_15 Location: 2064-2493 bp Feature: domain Description: AAA_15 Location: 2 064-2 493 bp Feature: gene Location: 3774-4574 bp Feature: domain Description: Hypoth_Ymh Location: 4194-4554 bp Feature: domain Description: Hypoth_Ymh Location: 4194-4554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons