myRT

myRT report for GCA_013111295.1_ASM1311129v1

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Seq: WYCR01000057.1 Vibrio cholerae strain EDC_689 733_Vc_EDC_689_contigs_EDC689_36, whole genome shotgun sequence (14309 bp)
Overview 1 RT 1: 3090-7352 bp Neighborhood of RT #1 [3090, 7354] RES RVT-UG7 DUF645 Feature: gene Location: 3090-3302 bp Feature: gene Location: 3577-4653 bp Feature: domain Description: RES Location: 4051-4510 bp Feature: domain Description: RES Location: 4051 -451 0 bp Feature: gene Location: 4818-6332 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5190-5613 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51 90-561 3 bp Feature: gene Location: 6504-6653 bp Feature: gene Location: 7172-7354 bp Feature: domain Description: DUF645 Location: 7181-7352 bp Feature: domain Description: DUF645 Location: 71 81 -7352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), RVT-UG7, DUF645 (pfam04875)

Seq: WYCR01000082.1 Vibrio cholerae strain EDC_689 733_Vc_EDC_689_contigs_EDC689_76, whole genome shotgun sequence (4966 bp)
Overview 1 RT 1: 562-2807 bp Neighborhood of RT #1 [562, 2807] ParE StbD RVT-Retrons HTH_XRE Feature: gene Location: 562-849 bp Feature: domain Description: ParE Location: 565-841 bp Feature: domain Description: ParE Location: 565-841 bp Feature: gene Location: 846-1139 bp Feature: domain Description: StbD Location: 876-1119 bp Feature: domain Description: StbD Location: 876-1119 bp Feature: gene Location: 1337-2296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1499-1994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1499-1994 bp Feature: gene Location: 2283-2579 bp Feature: domain Description: HTH_XRE Location: 2307-2469 bp Feature: domain Description: HTH_XRE Location: 2 307-2 469 bp Feature: gene Location: 2622-2807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), StbD (COG2161), RVT-Retrons, HTH_XRE (smart00530)