myRT

myRT report for GCA_013111605.1_ASM1311160v1

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Seq: JAACME010000013.1 Vibrio cholerae strain M5 51095_555_Vc_T5_, whole genome shotgun sequence (81597 bp)
Overview 1 RT 1: 66141-71865 bp Neighborhood of RT #1 [66141, 71865] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 66141-67775 bp Feature: domain Description: groEL Location: 66147-67770 bp Feature: domain Description: groEL Location: 661 47-67770 bp Feature: gene Location: 68297-68458 bp Feature: gene Location: 68871-70571 bp Feature: domain Description: RVT_N Location: 68943-69186 bp Feature: domain Description: RVT_N Location: 68943-691 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69231-69876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69231 -69876 bp Feature: domain Description: GIIM Note: maturase Location: 69927-70161 bp Feature: domain Description: GIIM Note: maturase Location: 69927-701 61 bp Feature: domain Description: HNHc Note: nucleases Location: 70377-70539 bp Feature: domain Description: HNHc Note: nucleases Location: 70377-70539 bp Feature: gene Location: 70757-70978 bp Feature: domain Description: DUF2188 Location: 70772-70949 bp Feature: domain Description: DUF21 88 Location: 70772-70949 bp Feature: gene Location: 71305-71865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)

Seq: JAACME010000039.1 Vibrio cholerae strain M5 51121_555_Vc_T5_, whole genome shotgun sequence (59004 bp)
Overview 1 RT 1: 51201-54971 bp Neighborhood of RT #1 [51201, 55000] RVT-UG4 PRK09776 PAS_9 PleD Feature: gene Location: 51201-51908 bp Feature: gene Location: 51802-52056 bp Feature: gene Location: 52103-52777 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52421-52676 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52 42 1-52 676 bp Feature: gene Location: 52832-53374 bp Feature: gene Location: 53729-55000 bp Feature: domain Description: PRK09776 Location: 53837-54143 bp Feature: domain Description: PRK09776 Location: 53837-54143 bp Feature: domain Description: PAS_9 Location: 54161-54467 bp Feature: domain Description: PAS_9 Location: 54161-54467 bp Feature: domain Description: PleD Location: 54467-54971 bp Feature: domain Description: PleD Location: 54467-54971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PleD (COG3706)