myRT

myRT report for GCA_013111635.1_ASM1311163v1

Download annotations/find similar RTs

Seq: JAACMF010000016.1 Vibrio cholerae strain M6 51196_556_Vc_T6_, whole genome shotgun sequence (52225 bp)
Overview 1 RT 1: 5032-10779 bp Neighborhood of RT #1 [5032, 10799] tdh RVT-Retrons AAA_15 AAA_15 Hypoth_Ymh Feature: gene Location: 5032-6063 bp Feature: domain Description: tdh Location: 5041-6061 bp Feature: domain Description: tdh Location: 5041 -6061 bp Feature: gene Location: 6138-6437 bp Feature: gene Location: 6458-7558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6602-7157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6602-71 57 bp Feature: gene Location: 7734-9851 bp Feature: domain Description: AAA_15 Location: 7737-8154 bp Feature: domain Description: AAA_1 5 Location: 7737-81 54 bp Feature: domain Description: AAA_15 Location: 8289-8718 bp Feature: domain Description: AAA_1 5 Location: 8289-871 8 bp Feature: gene Location: 9999-10799 bp Feature: domain Description: Hypoth_Ymh Location: 10419-10779 bp Feature: domain Description: Hypoth_Ymh Location: 1 041 9-1 0779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tdh (TIGR00692), RVT-Retrons, AAA_15 (pfam13175), Hypoth_Ymh (pfam09509)

Seq: JAACMF010000042.1 Vibrio cholerae strain M6 51222_556_Vc_T6_, whole genome shotgun sequence (344215 bp)
Overview 1 RT 1: 123403-128638 bp Neighborhood of RT #1 [123403, 128664] TIGR02646 COG3950 RVT-Retrons LysR Feature: gene Location: 123403-124020 bp Feature: domain Description: TIGR02646 Location: 123514-123898 bp Feature: domain Description: TIGR02 646 Location: 12 3514-12 3898 bp Feature: gene Location: 124033-125655 bp Feature: domain Description: COG3950 Location: 124219-125650 bp Feature: domain Description: COG3950 Location: 12 42 19-12 5650 bp Feature: gene Location: 125656-126603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125770-126367 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 5770-12 6367 bp Feature: gene Location: 127529-127801 bp Feature: gene Location: 127804-128664 bp Feature: domain Description: LysR Location: 127810-128638 bp Feature: domain Description: LysR Location: 12 7810-12 8638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, LysR (COG0583)