myRT

myRT report for GCA_013111875.1_ASM1311187v1

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Seq: JAACLS010000039.1 Vibrio cholerae strain M11 51668_561_Vc_T11_, whole genome shotgun sequence (120819 bp)
Overview 1 RT 1: 48962-52530 bp Neighborhood of RT #1 [48962, 52530] DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 48962-49522 bp Feature: gene Location: 49849-50070 bp Feature: domain Description: DUF2188 Location: 49864-50041 bp Feature: domain Description: DUF21 88 Location: 49864-50041 bp Feature: gene Location: 50256-51956 bp Feature: domain Description: RVT_N Location: 50328-50571 bp Feature: domain Description: RVT_N Location: 50328-50571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50616-51261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5061 6-51 261 bp Feature: domain Description: GIIM Note: maturase Location: 51312-51546 bp Feature: domain Description: GIIM Note: maturase Location: 51 31 2-51 546 bp Feature: domain Description: HNHc Note: nucleases Location: 51762-51924 bp Feature: domain Description: HNHc Note: nucleases Location: 51 762-51 924 bp Feature: gene Location: 52116-52286 bp Feature: gene Location: 52369-52530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAACLS010000047.1 Vibrio cholerae strain M11 51676_561_Vc_T11_, whole genome shotgun sequence (41680 bp)
Overview 1 RT 1: 33976-38682 bp Neighborhood of RT #1 [33976, 38936] RAMA RVT_N RVT-GII GIIM Phage_int_SAM_5 INT_ICEBs1_C_like Feature: gene Location: 33976-34275 bp Feature: gene Location: 34280-34828 bp Feature: domain Description: RAMA Location: 34619-34778 bp Feature: domain Description: RAMA Location: 34619-34778 bp Feature: gene Location: 35488-36960 bp Feature: domain Description: RVT_N Location: 35536-35779 bp Feature: domain Description: RVT_N Location: 35536-35779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35824-36451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3582 4-36451 bp Feature: domain Description: GIIM Note: maturase Location: 36514-36736 bp Feature: domain Description: GIIM Note: maturase Location: 36514-36736 bp Feature: gene Location: 37243-37452 bp Feature: gene Location: 37671-38936 bp Feature: domain Description: Phage_int_SAM_5 Location: 37806-38046 bp Feature: domain Description: Phage_int_SAM_5 Location: 37806-38046 bp Feature: domain Description: INT_ICEBs1_C_like Location: 38109-38682 bp Feature: domain Description: INT_ICEBs1_C_like Location: 38109-38682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAMA (pfam18755), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189)

Seq: JAACLS010000112.1 Vibrio cholerae strain M11 51741_561_Vc_T11_, whole genome shotgun sequence (73270 bp)
Overview 1 RT 1: 5823-9593 bp Neighborhood of RT #1 [5823, 9622] RVT-UG4 PRK09776 PAS_9 PleD Feature: gene Location: 5823-6530 bp Feature: gene Location: 6424-6678 bp Feature: gene Location: 6725-7399 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7043-7298 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7043 -7298 bp Feature: gene Location: 7454-7996 bp Feature: gene Location: 8351-9622 bp Feature: domain Description: PRK09776 Location: 8459-8765 bp Feature: domain Description: PRK09776 Location: 8459-8765 bp Feature: domain Description: PAS_9 Location: 8783-9089 bp Feature: domain Description: PAS_9 Location: 8783 -9089 bp Feature: domain Description: PleD Location: 9089-9593 bp Feature: domain Description: PleD Location: 9089-9593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PleD (COG3706)