myRT

myRT report for GCA_013112255.1_ASM1311225v1

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Seq: JAAXMP010000004.1 Flavobacterium sp. CLA17 plasmid unnamed1 scaffold4_size480286, whole genome shotgun sequence (480286 bp)
Overview 1 RT 1: 109398-113778 bp 2 RT 2: 128980-132787 bp 3 RT 3: 380222-383897 bp 4 RT 4: 430237-435669 bp Neighborhood of RT #1 [109398, 113789] RVT_N RVT-GII GIIM McrA BetA BetA Neighborhood of RT #2 [128980, 132787] MarR RVT_N RVT-GII McrA Neighborhood of RT #3 [380222, 383941] VanW RVT-GII GIIM DDE_Tnp_IS1 Neighborhood of RT #4 [430237, 435669] GDB1 RVT_N RVT-GII GIIM McrA Feature: gene Location: 109398-109601 bp Feature: gene Location: 109954-110259 bp Feature: gene Location: 110263-111186 bp Feature: domain Description: RVT_N Location: 110293-110539 bp Feature: domain Description: RVT_N Location: 1 1 0293-1 1 0539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110587-111175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0587-1 1 1 1 75 bp Feature: gene Location: 111367-112095 bp Feature: domain Description: GIIM Note: maturase Location: 111412-111646 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 41 2-1 1 1 646 bp Feature: domain Description: McrA Location: 111712-112018 bp Feature: domain Description: McrA Location: 1 1 1 71 2-1 1 201 8 bp Feature: gene Location: 112233-113789 bp Feature: domain Description: BetA Location: 112242-113334 bp Feature: domain Description: BetA Location: 1 1 2242-1 1 3334 bp Feature: domain Description: BetA Location: 113556-113778 bp Feature: domain Description: BetA Location: 1 1 3556-1 1 3778 bp Feature: gene Location: 128980-129348 bp Feature: domain Description: MarR Location: 129001-129334 bp Feature: domain Description: MarR Location: 1 29001 -1 29334 bp Feature: gene Location: 129481-130008 bp Feature: gene Location: 130087-131664 bp Feature: domain Description: RVT_N Location: 130123-130369 bp Feature: domain Description: RVT_N Location: 1 301 23-1 30369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130420-131014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30420-1 31 01 4 bp Feature: domain Description: McrA Location: 131254-131569 bp Feature: domain Description: McrA Location: 1 31 254-1 31 569 bp Feature: gene Location: 132142-132420 bp Feature: gene Location: 132644-132787 bp Feature: gene Location: 380222-381133 bp Feature: domain Description: VanW Location: 380450-380825 bp Feature: domain Description: VanW Location: 380450-380825 bp Feature: gene Location: 381308-381448 bp Feature: gene Location: 381595-382890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381850-382537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 850-382537 bp Feature: domain Description: GIIM Note: maturase Location: 382615-382822 bp Feature: domain Description: GIIM Note: maturase Location: 38261 5-382822 bp Feature: gene Location: 382965-383201 bp Feature: gene Location: 383534-383941 bp Feature: domain Description: DDE_Tnp_IS1 Location: 383651-383897 bp Feature: domain Description: DDE_Tnp_IS1 Location: 383651 -383897 bp Feature: gene Location: 430237-432369 bp Feature: domain Description: GDB1 Location: 430456-432277 bp Feature: domain Description: GDB1 Location: 430456-432277 bp Feature: gene Location: 432605-432757 bp Feature: gene Location: 432763-434145 bp Feature: domain Description: RVT_N Location: 432805-433051 bp Feature: domain Description: RVT_N Location: 432805-433051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433093-433633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433093-433633 bp Feature: domain Description: GIIM Note: maturase Location: 433648-433762 bp Feature: domain Description: GIIM Note: maturase Location: 433648-433762 bp Feature: domain Description: McrA Location: 433831-434128 bp Feature: domain Description: McrA Location: 433831 -4341 28 bp Feature: gene Location: 434371-434565 bp Feature: gene Location: 435184-435669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), BetA (COG2303), MarR (pfam01047), VanW (pfam04294), DDE_Tnp_IS1 (pfam03400), GDB1 (COG3408)

Seq: JAAXMP010000005.1 Flavobacterium sp. CLA17 plasmid unnamed2 scaffold5_size169415, whole genome shotgun sequence (169415 bp)
Overview 1 RT 1: 70048-75425 bp 2 RT 2: 126218-129900 bp Neighborhood of RT #1 [70048, 75425] RimI RVT-GII GIIM HNHc Resolvase Recombinase Zn_ribbon_recom RVT_N RVT-GII Neighborhood of RT #2 [126218, 129900] DDE_Tnp_IS1 RVT-GII GIIM Feature: gene Location: 70048-70584 bp Feature: domain Description: RimI Location: 70180-70564 bp Feature: domain Description: RimI Location: 70180-70564 bp Feature: gene Location: 70643-70822 bp Feature: gene Location: 71019-72011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71046-71250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71046-712 50 bp Feature: domain Description: GIIM Note: maturase Location: 71340-71565 bp Feature: domain Description: GIIM Note: maturase Location: 71340-71565 bp Feature: domain Description: HNHc Note: nucleases Location: 71766-71910 bp Feature: domain Description: HNHc Note: nucleases Location: 71766-71910 bp Feature: gene Location: 72015-72164 bp Feature: gene Location: 72304-72513 bp Feature: gene Location: 72500-73330 bp Feature: domain Description: Resolvase Location: 72524-72962 bp Feature: domain Description: Resolvase Location: 72 52 4-72 962 bp Feature: domain Description: Recombinase Location: 73052-73232 bp Feature: domain Description: Recombinase Location: 73052 -732 32 bp Feature: gene Location: 73336-73815 bp Feature: domain Description: Zn_ribbon_recom Location: 73438-73645 bp Feature: domain Description: Zn_ribbon_recom Location: 73438-73645 bp Feature: gene Location: 74168-74920 bp Feature: domain Description: RVT_N Location: 74201-74447 bp Feature: domain Description: RVT_N Location: 742 01-74447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74489-74879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74489-74879 bp Feature: gene Location: 74903-75076 bp Feature: gene Location: 75159-75425 bp Feature: gene Location: 126218-126604 bp Feature: domain Description: DDE_Tnp_IS1 Location: 126221-126590 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12 62 2 1-12 6590 bp Feature: gene Location: 126818-126967 bp Feature: gene Location: 127125-128420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127380-128067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7380-12 8067 bp Feature: domain Description: GIIM Note: maturase Location: 128145-128352 bp Feature: domain Description: GIIM Note: maturase Location: 12 8145-12 8352 bp Feature: gene Location: 128626-129627 bp Feature: gene Location: 129757-129900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimI (COG0456), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), DDE_Tnp_IS1 (pfam03400)

Seq: JAAXMP010000006.1 Flavobacterium sp. CLA17 plasmid unnamed3 scaffold6_size144070, whole genome shotgun sequence (144070 bp)
Overview 1 RT 1: 40633-45621 bp Neighborhood of RT #1 [40633, 45621] GlpG VCPO_N PAP2_haloperoxidase RVT_N RVT-GII GIIM McrA Feature: gene Location: 40633-41232 bp Feature: domain Description: GlpG Location: 40690-41197 bp Feature: domain Description: GlpG Location: 40690-41197 bp Feature: gene Location: 41403-42737 bp Feature: domain Description: VCPO_N Location: 41415-41706 bp Feature: domain Description: VCPO_N Location: 41415-41706 bp Feature: domain Description: PAP2_haloperoxidase Location: 41901-42723 bp Feature: domain Description: PAP2_haloperoxidase Location: 41901-42723 bp Feature: gene Location: 42974-44668 bp Feature: domain Description: RVT_N Location: 43016-43262 bp Feature: domain Description: RVT_N Location: 43 016-43 262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43304-43937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 04-43 93 7 bp Feature: domain Description: GIIM Note: maturase Location: 44072-44285 bp Feature: domain Description: GIIM Note: maturase Location: 44072-44285 bp Feature: domain Description: McrA Location: 44354-44648 bp Feature: domain Description: McrA Location: 443 54-44648 bp Feature: gene Location: 44894-45088 bp Feature: gene Location: 45469-45621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlpG (COG0705), VCPO_N (pfam17897), PAP2_haloperoxidase (cd03398), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JAAXMP010000008.1 Flavobacterium sp. CLA17 plasmid unnamed5 scaffold8_size135159, whole genome shotgun sequence (135159 bp)
Overview 1 RT 1: 3-6445 bp Neighborhood of RT #1 [3, 6445] RVT-GII GIIM InsA DDE_Tnp_IS1 HTH_23 DDE_3 RVT-GII GIIM Feature: gene Location: 3-143 bp Feature: gene Location: 436-1731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691-1378 bp Feature: domain Description: GIIM Note: maturase Location: 1456-1663 bp Feature: domain Description: GIIM Note: maturase Location: 14 56-1663 bp Feature: gene Location: 2289-2579 bp Feature: domain Description: InsA Location: 2304-2553 bp Feature: domain Description: InsA Location: 2304 -2553 bp Feature: gene Location: 2653-3039 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2656-3025 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2656-3025 bp Feature: gene Location: 3633-4148 bp Feature: domain Description: HTH_23 Location: 3720-3861 bp Feature: domain Description: HTH_23 Location: 3720-3861 bp Feature: gene Location: 4145-4711 bp Feature: domain Description: DDE_3 Location: 4205-4607 bp Feature: domain Description: DDE_3 Location: 4 205-4 607 bp Feature: gene Location: 4718-6010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4970-5657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 970-5657 bp Feature: domain Description: GIIM Note: maturase Location: 5735-5942 bp Feature: domain Description: GIIM Note: maturase Location: 5735-594 2 bp Feature: gene Location: 6164-6295 bp Feature: gene Location: 6308-6445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsA (COG3677), DDE_Tnp_IS1 (pfam03400), HTH_23 (pfam13384), DDE_3 (pfam13358)

Seq: JAAXMP010000009.1 Flavobacterium sp. CLA17 plasmid unnamed6 scaffold9_size156341, whole genome shotgun sequence (156340 bp)
Overview 1 RT 1: 141725-144131 bp Neighborhood of RT #1 [141725, 144131] DDE_3 HTH_Tnp_IS630 RVT-GII GIIM HNHc Feature: gene Location: 141725-142237 bp Feature: domain Description: DDE_3 Location: 141749-142169 bp Feature: domain Description: DDE_3 Location: 141749-142169 bp Feature: gene Location: 142234-142626 bp Feature: domain Description: HTH_Tnp_IS630 Location: 142249-142603 bp Feature: domain Description: HTH_Tnp_IS630 Location: 142249-142603 bp Feature: gene Location: 142638-143630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142671-142860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142671-142860 bp Feature: domain Description: GIIM Note: maturase Location: 142950-143184 bp Feature: domain Description: GIIM Note: maturase Location: 14295 0-143184 bp Feature: domain Description: HNHc Note: nucleases Location: 143376-143532 bp Feature: domain Description: HNHc Note: nucleases Location: 143376-1435 32 bp Feature: gene Location: 143634-143783 bp Feature: gene Location: 143922-144131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, GIIM (pfam08388), HNHc (smart00507)