myRT

myRT report for GCA_013112835.1_ASM1311283v1

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Seq: JABFFU010000001.1 Planctomycetes bacterium isolate AMX1 c_000000001127, whole genome shotgun sequence (2420449 bp)
Overview 1 RT 1: 1976617-1981025 bp 2 RT 2: 2412817-2420421 bp Neighborhood of RT #1 [1976617, 1981507] GIIM RVT-GII GIIM porA DUF3307 Neighborhood of RT #2 [2412817, 2420438] RVT-GII GIIM arc_metj RVT-GII GIIM PemK_toxin Feature: gene Location: 1976617-1976853 bp Feature: gene Location: 1976997-1977431 bp Feature: domain Description: GIIM Note: maturase Location: 1977192-1977354 bp Feature: domain Description: GIIM Note: maturase Location: 1 9771 92-1 977354 bp Feature: gene Location: 1977747-1979048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1978032-1978671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 978032-1 978671 bp Feature: domain Description: GIIM Note: maturase Location: 1978752-1978962 bp Feature: domain Description: GIIM Note: maturase Location: 1 978752-1 978962 bp Feature: gene Location: 1979515-1980741 bp Feature: domain Description: porA Location: 1979530-1980643 bp Feature: domain Description: porA Location: 1 979530-1 980643 bp Feature: gene Location: 1980761-1981507 bp Feature: domain Description: DUF3307 Location: 1980824-1981025 bp Feature: domain Description: DUF3307 Location: 1 980824-1 981 025 bp Feature: gene Location: 2412817-2413203 bp Feature: gene Location: 2413574-2413834 bp Feature: gene Location: 2414150-2415451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2414435-2415074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 4435-241 5074 bp Feature: domain Description: GIIM Note: maturase Location: 2415155-2415365 bp Feature: domain Description: GIIM Note: maturase Location: 241 51 55-241 5365 bp Feature: gene Location: 2415808-2416002 bp Feature: gene Location: 2416251-2416847 bp Feature: gene Location: 2417977-2418252 bp Feature: domain Description: arc_metj Location: 2418007-2418124 bp Feature: domain Description: arc_metj Location: 241 8007-241 81 24 bp Feature: gene Location: 2418297-2418584 bp Feature: gene Location: 2418804-2419421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418819-2419044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 881 9-241 9044 bp Feature: domain Description: GIIM Note: maturase Location: 2419116-2419335 bp Feature: domain Description: GIIM Note: maturase Location: 241 91 1 6-241 9335 bp Feature: gene Location: 2419675-2419821 bp Feature: gene Location: 2420193-2420438 bp Feature: domain Description: PemK_toxin Location: 2420232-2420421 bp Feature: domain Description: PemK_toxin Location: 2420232-2420421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, porA (PRK09622), DUF3307 (pfam11750), arc_metj (LOAD_arc_metj), PemK_toxin (pfam02452)

Seq: JABFFU010000002.1 Planctomycetes bacterium isolate AMX1 c_000000001129, whole genome shotgun sequence (1639069 bp)
Overview 1 RT 1: 245617-250074 bp 2 RT 2: 431444-435366 bp 3 RT 3: 527852-530857 bp 4 RT 4: 1042506-1047103 bp 5 RT 5: 1373494-1376634 bp Neighborhood of RT #1 [245617, 250121] GIIM RVT-GII GIIM RVT-GII RVT-GII LexA_DNA_bind Neighborhood of RT #2 [431444, 435366] KOG1263 RVT-GII Neighborhood of RT #3 [527852, 530913] TsaA RVT-GII GIIM TsaA PadR Neighborhood of RT #4 [1042506, 1047103] CcmA CcmA RVT-CRISPR Cas1_I-II-III CRISPR_Cas6 Neighborhood of RT #5 [1373494, 1376771] RVT-CRISPR-like GxxExxY DDE_Tnp_IS66 Feature: gene Location: 245617-245823 bp Feature: gene Location: 245903-246337 bp Feature: domain Description: GIIM Note: maturase Location: 246098-246260 bp Feature: domain Description: GIIM Note: maturase Location: 2 46098-2 462 60 bp Feature: gene Location: 246653-247954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246938-247577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 46938-2 47577 bp Feature: domain Description: GIIM Note: maturase Location: 247658-247868 bp Feature: domain Description: GIIM Note: maturase Location: 2 47658-2 47868 bp Feature: gene Location: 248068-248661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248071-248488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 48071-2 48488 bp Feature: gene Location: 248646-249074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248859-249051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 48859-2 49051 bp Feature: gene Location: 249285-249416 bp Feature: gene Location: 249858-250121 bp Feature: domain Description: LexA_DNA_bind Location: 249894-250074 bp Feature: domain Description: LexA_DNA_bind Location: 2 49894-2 50074 bp Feature: gene Location: 431444-432670 bp Feature: domain Description: KOG1263 Location: 431786-432512 bp Feature: domain Description: KOG12 63 Location: 431786-432 512 bp Feature: gene Location: 432954-433115 bp Feature: gene Location: 433371-434267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433584-434205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433584-4342 05 bp Feature: gene Location: 434317-434481 bp Feature: gene Location: 435151-435366 bp Feature: gene Location: 527852-528016 bp Feature: domain Description: TsaA Location: 527855-528005 bp Feature: domain Description: TsaA Location: 52 7855-52 8005 bp Feature: gene Location: 528213-528368 bp Feature: gene Location: 528627-529928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 528912-529551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 8912 -52 9551 bp Feature: domain Description: GIIM Note: maturase Location: 529632-529842 bp Feature: domain Description: GIIM Note: maturase Location: 52 9632 -52 9842 bp Feature: gene Location: 530042-530287 bp Feature: domain Description: TsaA Location: 530045-530228 bp Feature: domain Description: TsaA Location: 530045-5302 2 8 bp Feature: gene Location: 530590-530913 bp Feature: domain Description: PadR Location: 530653-530857 bp Feature: domain Description: PadR Location: 530653-530857 bp Feature: gene Location: 1042506-1042985 bp Feature: domain Description: CcmA Location: 1042599-1042923 bp Feature: domain Description: CcmA Location: 1042 599-1042 92 3 bp Feature: gene Location: 1043022-1043576 bp Feature: domain Description: CcmA Location: 1043310-1043562 bp Feature: domain Description: CcmA Location: 1043310-1043562 bp Feature: gene Location: 1043648-1045360 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1043654-1044314 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1043654-1044314 bp Feature: domain Description: Cas1_I-II-III Location: 1044395-1045313 bp Feature: domain Description: Cas1_I-II-III Location: 1044395-1045313 bp Feature: gene Location: 1045384-1046424 bp Feature: domain Description: CRISPR_Cas6 Location: 1046032-1046371 bp Feature: domain Description: CRISPR_Cas6 Location: 1046032 -1046371 bp Feature: gene Location: 1046918-1047103 bp Feature: gene Location: 1373494-1373868 bp Feature: gene Location: 1374037-1374666 bp Feature: gene Location: 1374666-1375610 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1374855-1375452 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1374855-1375452 bp Feature: gene Location: 1375610-1375972 bp Feature: domain Description: GxxExxY Location: 1375622-1375964 bp Feature: domain Description: GxxExxY Location: 137562 2 -1375964 bp Feature: gene Location: 1376064-1376771 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1376154-1376634 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1376154-1376634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, LexA_DNA_bind (pfam01726), KOG1263 (KOG1263, Multicopper oxidases ), TsaA (COG1720), PadR (pfam03551), CcmA (COG4133), RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas6 (pfam10040)
GxxExxY (TIGR04256), DDE_Tnp_IS66 (pfam03050)