myRT

myRT report for GCA_013114165.1_ASM1311416v1

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Seq: VTXZ01000003.1 Vibrio crassostreae strain 99-79-Y scaffold_2, whole genome shotgun sequence (327474 bp)
Overview 1 RT 1: 298675-304981 bp Neighborhood of RT #1 [298675, 305304] SLC5sbd_u1 RVT_N RVT-GII GIIM DUF4962 Hepar_II_III Feature: gene Location: 298675-298809 bp Feature: gene Location: 299068-300846 bp Feature: domain Description: SLC5sbd_u1 Location: 299083-300457 bp Feature: domain Description: SLC5sbd_u1 Location: 299083-300457 bp Feature: gene Location: 301261-302892 bp Feature: RT Description: RVT_N Location: 301468-301711 bp Feature: RT Description: RVT_N Location: 301 468-301 71 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301756-302383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 756-302383 bp Feature: domain Description: GIIM Note: maturase Location: 302443-302668 bp Feature: domain Description: GIIM Note: maturase Location: 302443-302668 bp Feature: gene Location: 302968-303111 bp Feature: gene Location: 303358-305304 bp Feature: domain Description: DUF4962 Location: 303367-304228 bp Feature: domain Description: DUF4962 Location: 303367-304228 bp Feature: domain Description: Hepar_II_III Location: 304450-304981 bp Feature: domain Description: Hepar_II_III Location: 304450-304981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLC5sbd_u1 (cd11477), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4962 (pfam16332), Hepar_II_III (pfam07940)

Seq: VTXZ01000035.1 Vibrio crassostreae strain 99-79-Y scaffold_34, whole genome shotgun sequence (67605 bp)
Overview 1 RT 1: 16258-21931 bp Neighborhood of RT #1 [16258, 21951] PRK00024 RVT_N RVT-GII GIIM MdoB DgkA Feature: gene Location: 16258-16440 bp Feature: gene Location: 16631-17116 bp Feature: domain Description: PRK00024 Location: 16733-17114 bp Feature: domain Description: PRK0002 4 Location: 16733-17114 bp Feature: gene Location: 17577-18929 bp Feature: RT Description: RVT_N Location: 17784-18027 bp Feature: RT Description: RVT_N Location: 17784-1802 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18072-18699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18072 -18699 bp Feature: domain Description: GIIM Note: maturase Location: 18756-18927 bp Feature: domain Description: GIIM Note: maturase Location: 18756-1892 7 bp Feature: gene Location: 19594-21549 bp Feature: domain Description: MdoB Location: 19645-21535 bp Feature: domain Description: MdoB Location: 19645-2 1535 bp Feature: gene Location: 21568-21951 bp Feature: domain Description: DgkA Location: 21574-21931 bp Feature: domain Description: DgkA Location: 2 1574-2 1931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MdoB (COG1368), DgkA (COG0818)

Seq: VTXZ01000010.1 Vibrio crassostreae strain 99-79-Y scaffold_9, whole genome shotgun sequence (159275 bp)
Overview 1 RT 1: 6013-13365 bp Neighborhood of RT #1 [6013, 13409] MFS_XylE_like RVT_N RVT-GII GIIM LolD SalY SalY Feature: gene Location: 6013-7458 bp Feature: domain Description: MFS_XylE_like Location: 6058-7360 bp Feature: domain Description: MFS_XylE_like Location: 6058-73 60 bp Feature: gene Location: 7914-8114 bp Feature: gene Location: 8132-9721 bp Feature: RT Description: RVT_N Location: 8297-8540 bp Feature: RT Description: RVT_N Location: 8297-8540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8585-9212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8585-9212 bp Feature: domain Description: GIIM Note: maturase Location: 9272-9497 bp Feature: domain Description: GIIM Note: maturase Location: 9272-9497 bp Feature: gene Location: 10168-10866 bp Feature: domain Description: LolD Location: 10189-10825 bp Feature: domain Description: LolD Location: 10189-10825 bp Feature: gene Location: 10863-13409 bp Feature: domain Description: SalY Location: 11643-12036 bp Feature: domain Description: SalY Location: 11643 -1203 6 bp Feature: domain Description: SalY Location: 12897-13365 bp Feature: domain Description: SalY Location: 12897-13 3 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolD (COG1136), SalY (COG0577), MFS_XylE_like (cd17359), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)