myRT

myRT report for GCA_013114205.1_ASM1311420v1

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Seq: VTXY01000020.1 Vibrio crassostreae strain 00-69-1 scaffold_19, whole genome shotgun sequence (97018 bp)
Overview 1 RT 1: 67-4503 bp Neighborhood of RT #1 [67, 4503] RVT_N RVT-GII GIIM SLC5sbd_u1 Feature: gene Location: 67-210 bp Feature: gene Location: 445-1917 bp Feature: RT Description: RVT_N Location: 493-736 bp Feature: RT Description: RVT_N Location: 493-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781 -1 408 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1693 bp Feature: domain Description: GIIM Note: maturase Location: 1 468-1 693 bp Feature: gene Location: 2332-4110 bp Feature: domain Description: SLC5sbd_u1 Location: 2347-3721 bp Feature: domain Description: SLC5sbd_u1 Location: 2347-3721 bp Feature: gene Location: 4369-4503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLC5sbd_u1 (cd11477), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VTXY01000049.1 Vibrio crassostreae strain 00-69-1 scaffold_48, whole genome shotgun sequence (13916 bp)
Overview 1 RT 1: 9335-12350 bp Neighborhood of RT #1 [9335, 12967] Rve DDE_Tnp_IS240 RVT-GII GIIM HNHc Tnp_DNA_bind Feature: gene Location: 9335-9490 bp Feature: domain Description: Rve Location: 9344-9479 bp Feature: domain Description: Rve Location: 9344-9479 bp Feature: gene Location: 9506-9730 bp Feature: domain Description: DDE_Tnp_IS240 Location: 9518-9677 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 9518-9677 bp Feature: gene Location: 9974-11509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10037-10715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10037-10715 bp Feature: domain Description: GIIM Note: maturase Location: 10781-10994 bp Feature: domain Description: GIIM Note: maturase Location: 10781-10994 bp Feature: domain Description: HNHc Note: nucleases Location: 11282-11426 bp Feature: domain Description: HNHc Note: nucleases Location: 112 82 -1142 6 bp Feature: gene Location: 11929-12111 bp Feature: gene Location: 12152-12967 bp Feature: domain Description: Tnp_DNA_bind Location: 12179-12350 bp Feature: domain Description: Tnp_DNA_bind Location: 12 179-12 350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tnp_DNA_bind (pfam14706), Rve (COG3316), DDE_Tnp_IS240 (pfam13610), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VTXY01000051.1 Vibrio crassostreae strain 00-69-1 scaffold_50, whole genome shotgun sequence (12396 bp)
Overview 1 RT 1: 5363-10347 bp Neighborhood of RT #1 [5363, 10427] COG3547 COG3547 RVT_N RVT-GII RVT-GII GIIM Couple_hipA HipA_C Feature: gene Location: 5363-6106 bp Feature: domain Description: COG3547 Location: 5369-5966 bp Feature: domain Description: COG3 547 Location: 53 69-5966 bp Feature: gene Location: 6148-6444 bp Feature: domain Description: COG3547 Location: 6166-6439 bp Feature: domain Description: COG3 547 Location: 6166-643 9 bp Feature: gene Location: 6537-7277 bp Feature: RT Description: RVT_N Location: 6813-7056 bp Feature: RT Description: RVT_N Location: 6813 -7056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7101-7203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7101-7203 bp Feature: gene Location: 7358-8236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7373-7727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 73 -7727 bp Feature: domain Description: GIIM Note: maturase Location: 7787-8012 bp Feature: domain Description: GIIM Note: maturase Location: 7787-8012 bp Feature: gene Location: 8255-8437 bp Feature: gene Location: 9111-10427 bp Feature: domain Description: Couple_hipA Location: 9141-9468 bp Feature: domain Description: Couple_hipA Location: 9141-9468 bp Feature: domain Description: HipA_C Location: 9636-10347 bp Feature: domain Description: HipA_C Location: 963 6-103 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Couple_hipA (pfam13657), HipA_C (pfam07804)

Seq: VTXY01000056.1 Vibrio crassostreae strain 00-69-1 scaffold_55, whole genome shotgun sequence (10763 bp)
Overview 1 RT 1: 67-2820 bp Neighborhood of RT #1 [67, 2820] RVT_N RVT-GII GIIM Feature: gene Location: 67-210 bp Feature: gene Location: 445-1917 bp Feature: RT Description: RVT_N Location: 493-736 bp Feature: RT Description: RVT_N Location: 4 93-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-14 08 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1693 bp Feature: domain Description: GIIM Note: maturase Location: 14 68-1693 bp Feature: gene Location: 2331-2516 bp Feature: gene Location: 2614-2820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VTXY01000064.1 Vibrio crassostreae strain 00-69-1 scaffold_63, whole genome shotgun sequence (7141 bp)
Overview 1 RT 1: 1881-5389 bp Neighborhood of RT #1 [1881, 5457] RVT-Retrons Zeta_toxin Feature: gene Location: 1881-2756 bp Feature: gene Location: 2760-3104 bp Feature: gene Location: 3253-4281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3475-4012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3475 -4012 bp Feature: gene Location: 4491-4661 bp Feature: gene Location: 4729-5457 bp Feature: domain Description: Zeta_toxin Location: 4825-5389 bp Feature: domain Description: Zeta_toxin Location: 4825 -5 389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Zeta_toxin (pfam06414)