myRT

myRT report for GCA_013114585.1_ASM1311458v1

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Seq: VTXF01000019.1 Vibrio sp. 99K-1 99K-1_SC18, whole genome shotgun sequence (112856 bp)
Overview 1 RT 1: 25764-30902 bp Neighborhood of RT #1 [25764, 30902] SLATT_5 RVT-UG3 RVT-UG8 Feature: gene Location: 25764-26162 bp Feature: gene Location: 26295-26900 bp Feature: domain Description: SLATT_5 Location: 26304-26859 bp Feature: domain Description: SLATT_5 Location: 26304-26859 bp Feature: gene Location: 26901-28142 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 27189-27651 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 271 89-27651 bp Feature: gene Location: 28139-30103 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 28652-29099 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 28652-29099 bp Feature: gene Location: 30286-30420 bp Feature: gene Location: 30606-30902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG3, RVT-UG8

Seq: VTXF01000023.1 Vibrio sp. 99K-1 99K-1_SC22, whole genome shotgun sequence (88187 bp)
Overview 1 RT 1: 32380-38829 bp Neighborhood of RT #1 [32380, 38831] TIGR02646 COG3950 RVT-Retrons Arm-DNA-bind_3 INT_P4_C DUF3187 Feature: gene Location: 32380-33024 bp Feature: domain Description: TIGR02646 Location: 32446-32857 bp Feature: domain Description: TIGR02 646 Location: 32 446-32 857 bp Feature: gene Location: 33021-34703 bp Feature: domain Description: COG3950 Location: 33240-34473 bp Feature: domain Description: COG3950 Location: 332 40-34473 bp Feature: gene Location: 34696-35637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34798-35398 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34798-35398 bp Feature: gene Location: 36086-37288 bp Feature: domain Description: Arm-DNA-bind_3 Location: 36095-36338 bp Feature: domain Description: Arm-DNA-bind_3 Location: 36095-36338 bp Feature: domain Description: INT_P4_C Location: 36707-37271 bp Feature: domain Description: INT_P4_C Location: 36707-372 71 bp Feature: gene Location: 37848-38831 bp Feature: domain Description: DUF3187 Location: 37899-38829 bp Feature: domain Description: DUF3187 Location: 37899-3882 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), DUF3187 (pfam11383)

Seq: VTXF01000049.1 Vibrio sp. 99K-1 99K-1_SC48, whole genome shotgun sequence (30584 bp)
Overview 1 RT 1: 14226-19781 bp Neighborhood of RT #1 [14226, 19813] PLPDE_III_AR_like_1 COG3367 RVT-GII GIIM HNHc PRK00024 Feature: gene Location: 14226-15200 bp Feature: domain Description: PLPDE_III_AR_like_1 Location: 14229-15117 bp Feature: domain Description: PLPDE_III_AR_like_1 Location: 14229-15117 bp Feature: gene Location: 15359-16564 bp Feature: domain Description: COG3367 Location: 15497-16517 bp Feature: domain Description: COG3 3 67 Location: 15497-16517 bp Feature: gene Location: 17130-18884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17412-18090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17412-18090 bp Feature: domain Description: GIIM Note: maturase Location: 18156-18369 bp Feature: domain Description: GIIM Note: maturase Location: 18156-183 69 bp Feature: domain Description: HNHc Note: nucleases Location: 18657-18801 bp Feature: domain Description: HNHc Note: nucleases Location: 18657-18801 bp Feature: gene Location: 19088-19396 bp Feature: gene Location: 19427-19813 bp Feature: domain Description: PRK00024 Location: 19529-19781 bp Feature: domain Description: PRK00024 Location: 19529-19781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLPDE_III_AR_like_1 (cd06815), COG3367 (Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family ), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: VTXF01000006.1 Vibrio sp. 99K-1 99K-1_SC5, whole genome shotgun sequence (200471 bp)
Overview 1 RT 1: 12388-19347 bp Neighborhood of RT #1 [12388, 20090] RVT-UG5 nitrilase AAA_21 Feature: gene Location: 12388-12798 bp Feature: gene Location: 12940-13338 bp Feature: gene Location: 14078-17026 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14582-15071 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14 582-15071 bp Feature: domain Description: nitrilase Location: 16364-16952 bp Feature: domain Description: nitrilase Location: 16364 -16952 bp Feature: gene Location: 17059-17535 bp Feature: gene Location: 18315-20090 bp Feature: domain Description: AAA_21 Location: 18399-19347 bp Feature: domain Description: AAA_21 Location: 18399-1934 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), AAA_21 (pfam13304)

Seq: VTXF01000009.1 Vibrio sp. 99K-1 99K-1_SC8, whole genome shotgun sequence (176795 bp)
Overview 1 RT 1: 170406-176138 bp Neighborhood of RT #1 [170406, 176548] PRK01202 PRK05367 RVT-UG2 PRK11479 Feature: gene Location: 170406-170786 bp Feature: domain Description: PRK01202 Location: 170415-170778 bp Feature: domain Description: PRK01202 Location: 170415 -170778 bp Feature: gene Location: 170877-173756 bp Feature: domain Description: PRK05367 Location: 170916-173751 bp Feature: domain Description: PRK05 367 Location: 170916-17375 1 bp Feature: gene Location: 174091-175374 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 174292-175075 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 174292-175 075 bp Feature: gene Location: 175493-175630 bp Feature: gene Location: 175835-176548 bp Feature: domain Description: PRK11479 Location: 175838-176138 bp Feature: domain Description: PRK11479 Location: 175 838-176138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01202 (glycine cleavage system protein GcvH), PRK05367 (aminomethyl-transferring glycine dehydrogenase), RVT-UG2, PRK11479 (YaeF family permuted papain-like enzyme)