myRT

myRT report for GCA_013116805.1_ASM1311680v1

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Seq: JABFNQ010000103.1 Myxococcus xanthus strain AB023 NODE_103_length_26042_cov_49.3435, whole genome shotgun sequence (26042 bp)
Overview 1 RT 1: 897-6549 bp Neighborhood of RT #1 [897, 6560] COG4941 RVT-Retrons COG4127 RNase_HI_like Feature: gene Location: 897-1325 bp Feature: gene Location: 1959-3155 bp Feature: domain Description: COG4941 Location: 1965-3135 bp Feature: domain Description: COG4941 Location: 1 965-31 35 bp Feature: gene Location: 3524-4852 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3968-4622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3968-4622 bp Feature: gene Location: 4869-5888 bp Feature: domain Description: COG4127 Location: 4887-5874 bp Feature: domain Description: COG41 27 Location: 4887-5874 bp Feature: gene Location: 5922-6560 bp Feature: domain Description: RNase_HI_like Location: 6171-6549 bp Feature: domain Description: RNase_HI_like Location: 61 71 -6549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), RVT-Retrons, COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RNase_HI_like (cd09279)

Seq: JABFNQ010000164.1 Myxococcus xanthus strain AB023 NODE_164_length_1939_cov_200.329, whole genome shotgun sequence (1939 bp)
Overview 1 RT 1: 466-1663 bp Neighborhood of RT #1 [466, 1776] RVT-GII GIIM Feature: gene Location: 466-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751-1369 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1441-1663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABFNQ010000054.1 Myxococcus xanthus strain AB023 NODE_54_length_66067_cov_60.4345, whole genome shotgun sequence (66067 bp)
Overview 1 RT 1: 54589-61470 bp Neighborhood of RT #1 [54589, 61649] RVT-Retrons COG3791 EpmB EpmB Feature: gene Location: 54589-56454 bp Feature: gene Location: 56451-58049 bp Feature: gene Location: 58228-59511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58693-59296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58693 -59296 bp Feature: gene Location: 59520-59939 bp Feature: domain Description: COG3791 Location: 59547-59901 bp Feature: domain Description: COG3 791 Location: 59547-59901 bp Feature: gene Location: 60321-61649 bp Feature: domain Description: EpmB Location: 60384-60570 bp Feature: domain Description: EpmB Location: 603 84-60570 bp Feature: domain Description: EpmB Location: 60714-61470 bp Feature: domain Description: EpmB Location: 60714-61470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)

Seq: JABFNQ010000093.1 Myxococcus xanthus strain AB023 NODE_93_length_31607_cov_58.3629, whole genome shotgun sequence (31607 bp)
Overview 1 RT 1: 7924-20717 bp Neighborhood of RT #1 [7924, 20737] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 7924-14460 bp Feature: domain Description: WD40 Location: 8083-8779 bp Feature: domain Description: WD4 0 Location: 8083-8779 bp Feature: domain Description: HEAT_2 Location: 9001-9184 bp Feature: domain Description: HEAT_2 Location: 9001-9184 bp Feature: domain Description: HEAT_2 Location: 9766-10015 bp Feature: domain Description: HEAT_2 Location: 9766-10015 bp Feature: domain Description: HEAT_2 Location: 10060-10225 bp Feature: domain Description: HEAT_2 Location: 10060-10225 bp Feature: domain Description: HEAT_2 Location: 10255-10486 bp Feature: domain Description: HEAT_2 Location: 10255-104 86 bp Feature: domain Description: HEAT_2 Location: 10924-11077 bp Feature: domain Description: HEAT_2 Location: 10924 -11077 bp Feature: domain Description: HEAT_2 Location: 11188-11347 bp Feature: domain Description: HEAT_2 Location: 11188-1134 7 bp Feature: domain Description: HEAT_2 Location: 11707-11896 bp Feature: domain Description: HEAT_2 Location: 11707-11896 bp Feature: domain Description: HEAT_2 Location: 11941-12148 bp Feature: domain Description: HEAT_2 Location: 1194 1-1214 8 bp Feature: domain Description: HEAT_2 Location: 12313-12547 bp Feature: domain Description: HEAT_2 Location: 12313-1254 7 bp Feature: domain Description: HEAT_2 Location: 13159-13375 bp Feature: domain Description: HEAT_2 Location: 13159-13375 bp Feature: domain Description: HEAT_2 Location: 13855-14107 bp Feature: domain Description: HEAT_2 Location: 13855-14 107 bp Feature: domain Description: HEAT_2 Location: 14233-14389 bp Feature: domain Description: HEAT_2 Location: 14 233-14 389 bp Feature: gene Location: 14457-16310 bp Feature: gene Location: 16711-18168 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17269-17911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17269-17911 bp Feature: gene Location: 18172-19062 bp Feature: domain Description: DAP2 Location: 18298-18880 bp Feature: domain Description: DAP2 Location: 18298-18880 bp Feature: gene Location: 19214-20737 bp Feature: domain Description: BetA Location: 19229-19724 bp Feature: domain Description: BetA Location: 19229-19724 bp Feature: domain Description: BetA Location: 19865-20168 bp Feature: domain Description: BetA Location: 19865-20168 bp Feature: domain Description: BetA Location: 20303-20717 bp Feature: domain Description: BetA Location: 20303-20717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DAP2 (COG1506), BetA (COG2303), WD40 (smart00320), HEAT_2 (pfam13646)