myRT

myRT report for GCA_013116835.1_ASM1311683v1

Download annotations/find similar RTs

Seq: JABFNR010000149.1 Myxococcus xanthus strain CA029 NODE_149_length_20043_cov_50.1125, whole genome shotgun sequence (20043 bp)
Overview 1 RT 1: 3060-7575 bp Neighborhood of RT #1 [3060, 8003] RNase_HI_like RVT-Retrons COG4941 LPAM_1 Feature: gene Location: 3060-3698 bp Feature: domain Description: RNase_HI_like Location: 3309-3687 bp Feature: domain Description: RNase_HI_like Location: 3309-3687 bp Feature: gene Location: 3728-3946 bp Feature: gene Location: 4048-5376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4492-5146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4492-51 46 bp Feature: gene Location: 5745-6941 bp Feature: domain Description: COG4941 Location: 5751-6921 bp Feature: domain Description: COG4941 Location: 5751 -6921 bp Feature: gene Location: 7335-8003 bp Feature: domain Description: LPAM_1 Location: 7524-7575 bp Feature: domain Description: LPAM_1 Location: 7524-7575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_HI_like (cd09279), RVT-Retrons, COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), LPAM_1 (pfam08139)

Seq: JABFNR010000205.1 Myxococcus xanthus strain CA029 NODE_205_length_6606_cov_50.3158, whole genome shotgun sequence (6606 bp)
Overview 1 RT 1: 677-3873 bp Neighborhood of RT #1 [677, 4031] RVT-GII GIIM COG3617 P63C Feature: gene Location: 677-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962 -1580 bp Feature: domain Description: GIIM Note: maturase Location: 1652-1874 bp Feature: domain Description: GIIM Note: maturase Location: 1652 -1874 bp Feature: gene Location: 2498-2812 bp Feature: gene Location: 3255-4031 bp Feature: domain Description: COG3617 Location: 3261-3564 bp Feature: domain Description: COG3617 Location: 32 61-3564 bp Feature: domain Description: P63C Location: 3606-3873 bp Feature: domain Description: P63C Location: 3606-3873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3617 (Prophage antirepressor ), P63C (pfam10546), RVT-GII, GIIM (pfam08388)

Seq: JABFNR010000059.1 Myxococcus xanthus strain CA029 NODE_59_length_48587_cov_34.139, whole genome shotgun sequence (48587 bp)
Overview 1 RT 1: 33130-45917 bp Neighborhood of RT #1 [33130, 45937] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 33130-39666 bp Feature: domain Description: WD40 Location: 33289-33985 bp Feature: domain Description: WD40 Location: 3 3 289-3 3 985 bp Feature: domain Description: HEAT_2 Location: 34207-34390 bp Feature: domain Description: HEAT_2 Location: 3 4207-3 43 90 bp Feature: domain Description: HEAT_2 Location: 34972-35221 bp Feature: domain Description: HEAT_2 Location: 3 4972-3 5221 bp Feature: domain Description: HEAT_2 Location: 35266-35431 bp Feature: domain Description: HEAT_2 Location: 3 5266-3 543 1 bp Feature: domain Description: HEAT_2 Location: 35461-35692 bp Feature: domain Description: HEAT_2 Location: 3 5461-3 5692 bp Feature: domain Description: HEAT_2 Location: 36130-36283 bp Feature: domain Description: HEAT_2 Location: 3 613 0-3 6283 bp Feature: domain Description: HEAT_2 Location: 36391-36553 bp Feature: domain Description: HEAT_2 Location: 3 63 91-3 6553 bp Feature: domain Description: HEAT_2 Location: 36913-37102 bp Feature: domain Description: HEAT_2 Location: 3 6913 -3 7102 bp Feature: domain Description: HEAT_2 Location: 37147-37354 bp Feature: domain Description: HEAT_2 Location: 3 7147-3 73 54 bp Feature: domain Description: HEAT_2 Location: 37519-37753 bp Feature: domain Description: HEAT_2 Location: 3 7519-3 7753 bp Feature: domain Description: HEAT_2 Location: 37816-37975 bp Feature: domain Description: HEAT_2 Location: 3 7816-3 7975 bp Feature: domain Description: HEAT_2 Location: 38365-38581 bp Feature: domain Description: HEAT_2 Location: 3 83 65-3 8581 bp Feature: domain Description: HEAT_2 Location: 39094-39313 bp Feature: domain Description: HEAT_2 Location: 3 9094-3 93 13 bp Feature: domain Description: HEAT_2 Location: 39439-39577 bp Feature: domain Description: HEAT_2 Location: 3 943 9-3 9577 bp Feature: gene Location: 39663-41516 bp Feature: gene Location: 41917-43374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42475-43117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42475-43 117 bp Feature: gene Location: 43378-44268 bp Feature: domain Description: DAP2 Location: 43504-44083 bp Feature: domain Description: DAP2 Location: 43 504-44083 bp Feature: gene Location: 44414-45937 bp Feature: domain Description: BetA Location: 44429-44924 bp Feature: domain Description: BetA Location: 44429-44924 bp Feature: domain Description: BetA Location: 45065-45368 bp Feature: domain Description: BetA Location: 45065-453 68 bp Feature: domain Description: BetA Location: 45503-45917 bp Feature: domain Description: BetA Location: 45503 -45917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), RVT-Retrons, DAP2 (COG1506), BetA (COG2303)

Seq: JABFNR010000060.1 Myxococcus xanthus strain CA029 NODE_60_length_48519_cov_45.3871, whole genome shotgun sequence (48519 bp)
Overview 1 RT 1: 29582-36629 bp Neighborhood of RT #1 [29582, 36629] EpmB COG3791 RVT-Retrons Feature: gene Location: 29582-30910 bp Feature: domain Description: EpmB Location: 29645-30731 bp Feature: domain Description: EpmB Location: 2964 5-30731 bp Feature: gene Location: 31279-31698 bp Feature: domain Description: COG3791 Location: 31303-31660 bp Feature: domain Description: COG3791 Location: 31303-31660 bp Feature: gene Location: 31707-32990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32172-32775 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32172-32775 bp Feature: gene Location: 33169-34767 bp Feature: gene Location: 34764-36629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EpmB (COG1509), COG3791 (Uncharacterized conserved protein ), RVT-Retrons