myRT

myRT report for GCA_013131485.1_ASM1313148v1

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Seq: JAAGEF010000018.1 Escherichia coli strain MH14 contig18_MH14, whole genome shotgun sequence (108014 bp)
Overview 1 RT 1: 74098-78644 bp Neighborhood of RT #1 [74098, 78667] RVT-Retrons PBP2_CrgA_like_5 XdhC Feature: gene Location: 74098-74292 bp Feature: gene Location: 74575-75543 bp Feature: gene Location: 75530-76462 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75632-76223 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75632-76223 bp Feature: gene Location: 77322-77732 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 77394-77706 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 77394-77706 bp Feature: gene Location: 77711-78667 bp Feature: domain Description: XdhC Location: 77789-78644 bp Feature: domain Description: XdhC Location: 77789-78644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: JAAGEF010000030.1 Escherichia coli strain MH14 contig30_MH14, whole genome shotgun sequence (37558 bp)
Overview 1 RT 1: 19312-22430 bp Neighborhood of RT #1 [19312, 22430] RVT-GII InsA Feature: gene Location: 19312-19518 bp Feature: gene Location: 19852-20061 bp Feature: gene Location: 20196-21437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20463-21294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0463-2 12 94 bp Feature: gene Location: 21853-22128 bp Feature: domain Description: InsA Location: 21856-22123 bp Feature: domain Description: InsA Location: 2 1856-2 2 12 3 bp Feature: gene Location: 22269-22430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsA (COG3677)

Seq: JAAGEF010000009.1 Escherichia coli strain MH14 contig9_MH14, whole genome shotgun sequence (169227 bp)
Overview 1 RT 1: 161186-169226 bp Neighborhood of RT #1 [161186, 169226] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Feature: gene Location: 161186-163768 bp Feature: domain Description: mutS1 Location: 161237-163757 bp Feature: domain Description: mutS1 Location: 16123 7-163 757 bp Feature: gene Location: 163913-165373 bp Feature: domain Description: INT_Rci_Hp1_C Location: 164288-164495 bp Feature: domain Description: INT_Rci_Hp1_C Location: 164288-164495 bp Feature: domain Description: INT_P4_C Location: 164714-165251 bp Feature: domain Description: INT_P4_C Location: 164714-165251 bp Feature: gene Location: 166629-168647 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 167199-167649 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 167199-167649 bp Feature: gene Location: 169074-169226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8