myRT

myRT report for GCA_013131605.1_ASM1313160v1

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Seq: JABFYN010000095.1 Escherichia coli strain MCE10 NODE_24_length_78163_cov_27.7045, whole genome shotgun sequence (78163 bp)
Overview 1 RT 1: 125-3886 bp Neighborhood of RT #1 [125, 3886] Mrr_cat RVT-Retrons Feature: gene Location: 125-1084 bp Feature: domain Description: Mrr_cat Location: 275-482 bp Feature: domain Description: Mrr_cat Location: 275-482 bp Feature: gene Location: 1130-1297 bp Feature: gene Location: 1319-3091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1478-2096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 478-2096 bp Feature: gene Location: 3312-3455 bp Feature: gene Location: 3647-3886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), RVT-Retrons

Seq: JABFYN010000092.1 Escherichia coli strain MCE10 NODE_27_length_53006_cov_59.9683, whole genome shotgun sequence (53006 bp)
Overview 1 RT 1: 43728-47860 bp Neighborhood of RT #1 [43728, 47860] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 43728-43961 bp Feature: domain Description: DUF905 Location: 43758-43956 bp Feature: domain Description: DUF905 Location: 43758-43956 bp Feature: gene Location: 44024-44476 bp Feature: domain Description: PRK13732 Location: 44030-44474 bp Feature: domain Description: PRK13732 Location: 44030-44474 bp Feature: gene Location: 44671-46572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44938-45769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44938-45769 bp Feature: domain Description: Intron_maturas2 Location: 45883-46141 bp Feature: domain Description: Intron_maturas2 Location: 45883-46141 bp Feature: domain Description: HNHc Note: nucleases Location: 46315-46477 bp Feature: domain Description: HNHc Note: nucleases Location: 46315-46477 bp Feature: gene Location: 47314-47517 bp Feature: gene Location: 47594-47860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABFYN010000085.1 Escherichia coli strain MCE10 NODE_34_length_28548_cov_30.3994, whole genome shotgun sequence (28548 bp)
Overview 1 RT 1: 17584-22997 bp Neighborhood of RT #1 [17584, 23881] Q ABC_ATPase RVT-Retrons Phage_GPA Feature: gene Location: 17584-18618 bp Feature: domain Description: Q Location: 17587-18610 bp Feature: domain Description: Q Location: 17587-18610 bp Feature: gene Location: 18941-20293 bp Feature: domain Description: ABC_ATPase Location: 19001-19724 bp Feature: domain Description: ABC_ATPase Location: 19001-19724 bp Feature: gene Location: 20295-21284 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20412-20973 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20412-20973 bp Feature: gene Location: 21465-21599 bp Feature: gene Location: 21611-23881 bp Feature: domain Description: Phage_GPA Location: 22010-22997 bp Feature: domain Description: Phage_GPA Location: 22010-22997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), ABC_ATPase (pfam09818), RVT-Retrons, Phage_GPA (pfam05840)

Seq: JABFYN010000071.1 Escherichia coli strain MCE10 NODE_48_length_11765_cov_62.1831, whole genome shotgun sequence (11765 bp)
Overview 1 RT 1: 10681-11605 bp Neighborhood of RT #1 [10681, 11763] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10681-11130 bp Feature: domain Description: PRK10173 Location: 10684-11122 bp Feature: domain Description: PRK10173 Location: 10684 -11122 bp Feature: gene Location: 11114-11425 bp Feature: domain Description: PRK10173 Location: 11117-11336 bp Feature: domain Description: PRK10173 Location: 11117-11336 bp Feature: gene Location: 11464-11763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11533-11605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11533-11605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: JABFYN010000052.1 Escherichia coli strain MCE10 NODE_67_length_2849_cov_60.7278, whole genome shotgun sequence (2849 bp)
Overview 1 RT 1: 3-2190 bp Neighborhood of RT #1 [3, 2228] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1499-1795 bp Feature: domain Description: PHA02517 Location: 1502-1751 bp Feature: domain Description: PHA025 17 Location: 15 02-175 1 bp Feature: gene Location: 1824-2228 bp Feature: domain Description: InsE Location: 1854-2190 bp Feature: domain Description: InsE Location: 185 4-2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: JABFYN010000043.1 Escherichia coli strain MCE10 NODE_76_length_1747_cov_142.593, whole genome shotgun sequence (1747 bp)
Overview 1 RT 1: 3-1742 bp Neighborhood of RT #1 [3, 1744] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276 -330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1744 bp Feature: domain Description: InsE Location: 1421-1742 bp Feature: domain Description: InsE Location: 1421-1742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII