myRT

myRT report for GCA_013138655.1_ASM1313865v1

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Seq: WTCI01000350.1 Desulfuromonadaceae bacterium isolate GLR9 c_000000578472, whole genome shotgun sequence (10959 bp)
Overview 1 RT 1: 6557-10817 bp Neighborhood of RT #1 [6557, 10957] LolA_like AcrR RVT-GII Transposase_20 Feature: gene Location: 6557-7327 bp Feature: domain Description: LolA_like Location: 6650-7298 bp Feature: domain Description: LolA_like Location: 6650-7298 bp Feature: gene Location: 7328-7924 bp Feature: domain Description: AcrR Location: 7343-7904 bp Feature: domain Description: AcrR Location: 7343-7904 bp Feature: gene Location: 8196-9683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-9312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-931 2 bp Feature: gene Location: 9909-10073 bp Feature: gene Location: 10550-10957 bp Feature: domain Description: Transposase_20 Location: 10559-10817 bp Feature: domain Description: Transposase_20 Location: 1 0559-1 081 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolA_like (pfam17131), AcrR (COG1309), RVT-GII, Transposase_20 (pfam02371)

Seq: WTCI01000278.1 Desulfuromonadaceae bacterium isolate GLR9 c_000000805956, whole genome shotgun sequence (2660 bp)
Overview 1 RT 1: 1-2619 bp Neighborhood of RT #1 [1, 2657] TIGR02231 YgdH RVT-GII Feature: gene Location: 1-705 bp Feature: domain Description: TIGR02231 Location: 73-706 bp Feature: domain Description: TIGR02 2 31 Location: 73-706 bp Feature: gene Location: 846-1871 bp Feature: domain Description: YgdH Location: 1023-1617 bp Feature: domain Description: YgdH Location: 102 3-1617 bp Feature: gene Location: 1959-2657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2292-2619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 92 -2 619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02231 (conserved hypothetical protein), YgdH (COG1611), RVT-GII

Seq: WTCI01000091.1 Desulfuromonadaceae bacterium isolate GLR9 c_000000814229, whole genome shotgun sequence (22398 bp)
Overview 1 RT 1: 1611-7111 bp Neighborhood of RT #1 [1611, 7113] rodA_shape dCache_1 HK_WalK RVT-GII GIIM PleD PleD Feature: gene Location: 1611-2708 bp Feature: domain Description: rodA_shape Location: 1644-2697 bp Feature: domain Description: rodA_shape Location: 1644-2697 bp Feature: gene Location: 3141-5234 bp Feature: domain Description: dCache_1 Location: 3264-3987 bp Feature: domain Description: dCache_1 Location: 3 264-3 987 bp Feature: domain Description: HK_WalK Location: 4110-5226 bp Feature: domain Description: HK_WalK Location: 4110-5226 bp Feature: gene Location: 5493-6041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5538-5817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553 8-5817 bp Feature: domain Description: GIIM Note: maturase Location: 5892-6033 bp Feature: domain Description: GIIM Note: maturase Location: 5892-603 3 bp Feature: gene Location: 6232-6690 bp Feature: domain Description: PleD Location: 6238-6679 bp Feature: domain Description: PleD Location: 623 8-6679 bp Feature: gene Location: 6694-7113 bp Feature: domain Description: PleD Location: 6976-7111 bp Feature: domain Description: PleD Location: 6976-7111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rodA_shape (TIGR02210), dCache_1 (pfam02743), HK_WalK (NF033092), RVT-GII, GIIM (pfam08388), PleD (COG3706)