myRT

myRT report for GCA_013138665.1_ASM1313866v1

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Seq: WTCG01000295.1 Methanococcoides sp. isolate GLR86 c_000000134299, whole genome shotgun sequence (5720 bp)
Overview 1 RT 1: 254-4823 bp Neighborhood of RT #1 [254, 4864] PAP2_Aur1_like RVT_N RVT-GII RVT-GII GIIM RhaT Feature: gene Location: 254-454 bp Feature: domain Description: PAP2_Aur1_like Location: 311-437 bp Feature: domain Description: PAP2_Aur1 _like Location: 31 1 -437 bp Feature: gene Location: 1216-2208 bp Feature: RT Description: RVT_N Location: 1315-1552 bp Feature: RT Description: RVT_N Location: 1 31 5-1 552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603-21 82 bp Feature: gene Location: 2168-2938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2174-2264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 74-2264 bp Feature: domain Description: GIIM Note: maturase Location: 2315-2549 bp Feature: domain Description: GIIM Note: maturase Location: 231 5-2549 bp Feature: gene Location: 3322-3525 bp Feature: gene Location: 3812-4864 bp Feature: domain Description: RhaT Location: 3863-4823 bp Feature: domain Description: RhaT Location: 3863-4823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PAP2_Aur1_like (cd03386), RhaT (TIGR00776)

Seq: WTCG01000229.1 Methanococcoides sp. isolate GLR86 c_000000194684, whole genome shotgun sequence (3377 bp)
Overview 1 RT 1: 1-2566 bp Neighborhood of RT #1 [1, 2566] RVT_N RVT-GII GIIM Feature: gene Location: 1-1539 bp Feature: RT Description: RVT_N Location: 4-148 bp Feature: RT Description: RVT_N Location: 4-148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 11-874 bp Feature: domain Description: GIIM Note: maturase Location: 925-1159 bp Feature: domain Description: GIIM Note: maturase Location: 92 5-1159 bp Feature: gene Location: 1864-2283 bp Feature: gene Location: 2384-2566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WTCG01000095.1 Methanococcoides sp. isolate GLR86 c_000000713599, whole genome shotgun sequence (3690 bp)
Overview 1 RT 1: 639-3667 bp Neighborhood of RT #1 [639, 3687] RVT_N RVT-GII GIIM phageSPP1_gp7 BaeS Feature: gene Location: 639-2393 bp Feature: RT Description: RVT_N Location: 771-1014 bp Feature: RT Description: RVT_N Location: 771-1014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1059-1722 bp Feature: domain Description: GIIM Note: maturase Location: 1776-2010 bp Feature: domain Description: GIIM Note: maturase Location: 1776-2010 bp Feature: gene Location: 2491-2892 bp Feature: domain Description: phageSPP1_gp7 Location: 2524-2776 bp Feature: domain Description: phageSPP1_gp7 Location: 2524-2776 bp Feature: gene Location: 2905-3687 bp Feature: domain Description: BaeS Location: 2923-3667 bp Feature: domain Description: BaeS Location: 2923 -3 667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phageSPP1_gp7 (TIGR01641), BaeS (COG0642), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WTCG01000172.1 Methanococcoides sp. isolate GLR86 c_000000782297, whole genome shotgun sequence (3339 bp)
Overview 1 RT 1: 127-2875 bp Neighborhood of RT #1 [127, 2913] RVT_N RVT-GII GIIM PspE PspE NifX Feature: gene Location: 127-1869 bp Feature: RT Description: RVT_N Location: 259-502 bp Feature: RT Description: RVT_N Location: 259-502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547-1207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 7-1207 bp Feature: domain Description: GIIM Note: maturase Location: 1258-1492 bp Feature: domain Description: GIIM Note: maturase Location: 1258-14 92 bp Feature: gene Location: 2002-2520 bp Feature: domain Description: PspE Location: 2008-2155 bp Feature: domain Description: PspE Location: 2008-2155 bp Feature: domain Description: PspE Location: 2179-2458 bp Feature: domain Description: PspE Location: 2179-24 58 bp Feature: gene Location: 2533-2913 bp Feature: domain Description: NifX Location: 2536-2875 bp Feature: domain Description: NifX Location: 2536-2875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PspE (COG0607), NifX (COG1433)