myRT

myRT report for GCA_013139685.1_ASM1313968v1

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Seq: WTAI01000593.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000048828, whole genome shotgun sequence (3269 bp)
Overview 1 RT 1: 279-3267 bp Neighborhood of RT #1 [279, 3267] Transposase_20 RVT_N RVT-GII GIIM Feature: gene Location: 279-515 bp Feature: gene Location: 605-1306 bp Feature: domain Description: Transposase_20 Location: 938-1190 bp Feature: domain Description: Transposase_20 Location: 938-1 1 90 bp Feature: gene Location: 1452-2858 bp Feature: RT Description: RVT_N Location: 1458-1608 bp Feature: RT Description: RVT_N Location: 1 458-1 608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653-2316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 653-231 6 bp Feature: domain Description: GIIM Note: maturase Location: 2370-2601 bp Feature: domain Description: GIIM Note: maturase Location: 2370-2601 bp Feature: gene Location: 3043-3267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Transposase_20 (pfam02371)

Seq: WTAI01000658.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000056058, whole genome shotgun sequence (3644 bp)
Overview 1 RT 1: 1-1351 bp Neighborhood of RT #1 [1, 1351] RVT-GII GIIM Feature: gene Location: 1-840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-352 bp Feature: domain Description: GIIM Note: maturase Location: 409-637 bp Feature: domain Description: GIIM Note: maturase Location: 409-637 bp Feature: gene Location: 874-1074 bp Feature: gene Location: 1193-1351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WTAI01000617.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000085216, whole genome shotgun sequence (2651 bp)
Overview 1 RT 1: 2-2084 bp Neighborhood of RT #1 [2, 2084] RVT-GII RVT-GII GIIM Feature: gene Location: 2-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-3 29 bp Feature: gene Location: 342-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 63 -53 7 bp Feature: domain Description: GIIM Note: maturase Location: 576-777 bp Feature: domain Description: GIIM Note: maturase Location: 576-777 bp Feature: gene Location: 1041-1796 bp Feature: gene Location: 1809-2084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WTAI01000339.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000089615, whole genome shotgun sequence (4405 bp)
Overview 1 RT 1: 133-3290 bp Neighborhood of RT #1 [133, 3290] DDE_Tnp_1 RVT-GII GIIM Feature: gene Location: 133-1227 bp Feature: domain Description: DDE_Tnp_1 Location: 691-1048 bp Feature: domain Description: DDE_Tnp_1 Location: 691-104 8 bp Feature: gene Location: 1273-1548 bp Feature: gene Location: 1558-2316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1561-1813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1561-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1867-2098 bp Feature: domain Description: GIIM Note: maturase Location: 1867-2098 bp Feature: gene Location: 2394-2531 bp Feature: gene Location: 2895-3290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: WTAI01000571.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000105685, whole genome shotgun sequence (2800 bp)
Overview 1 RT 1: 196-2794 bp Neighborhood of RT #1 [196, 2799] RVT_N RVT-GII GIIM MscS Feature: gene Location: 196-1809 bp Feature: RT Description: RVT_N Location: 367-610 bp Feature: RT Description: RVT_N Location: 367-610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673-1303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673-1303 bp Feature: domain Description: GIIM Note: maturase Location: 1360-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1360-15 88 bp Feature: gene Location: 2053-2799 bp Feature: domain Description: MscS Location: 2062-2794 bp Feature: domain Description: MscS Location: 2062-2794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MscS (COG0668)

Seq: WTAI01000397.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000113001, whole genome shotgun sequence (2897 bp)
Overview 1 RT 1: 161-2589 bp Neighborhood of RT #1 [161, 2810] RVT_N RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 161-1690 bp Feature: RT Description: RVT_N Location: 248-491 bp Feature: RT Description: RVT_N Location: 248-491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536 -1184 bp Feature: domain Description: GIIM Note: maturase Location: 1238-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1238-146 9 bp Feature: gene Location: 1866-2810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911-2304 bp Feature: domain Description: GIIM Note: maturase Location: 2358-2589 bp Feature: domain Description: GIIM Note: maturase Location: 2358-2589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WTAI01000228.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000124224, whole genome shotgun sequence (3877 bp)
Overview 1 RT 1: 1-2015 bp Neighborhood of RT #1 [1, 2077] RVT-GII GIIM DHOD_e_trans_like2 DUF1016_N YhcG_C Feature: gene Location: 1-621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-115 bp Feature: domain Description: GIIM Note: maturase Location: 172-400 bp Feature: domain Description: GIIM Note: maturase Location: 17 2-400 bp Feature: gene Location: 799-1053 bp Feature: domain Description: DHOD_e_trans_like2 Location: 808-988 bp Feature: domain Description: DHOD_e_trans_like2 Location: 808-988 bp Feature: gene Location: 1046-2077 bp Feature: domain Description: DUF1016_N Location: 1085-1493 bp Feature: domain Description: DUF1016_N Location: 1085-1493 bp Feature: domain Description: YhcG_C Location: 1562-2015 bp Feature: domain Description: YhcG_C Location: 1562-2015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, RVT-GII, GIIM (pfam08388), DHOD_e_trans_like2 (cd06220)

Seq: WTAI01000590.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000269912, whole genome shotgun sequence (2589 bp)
Overview 1 RT 1: 2-2564 bp Neighborhood of RT #1 [2, 2587] RVT_N RVT-GII GIIM PRK01565 Feature: gene Location: 2-535 bp Feature: gene Location: 522-2024 bp Feature: RT Description: RVT_N Location: 591-834 bp Feature: RT Description: RVT_N Location: 591-8 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 882-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 8 2-1536 bp Feature: domain Description: GIIM Note: maturase Location: 1590-1821 bp Feature: domain Description: GIIM Note: maturase Location: 1590-18 21 bp Feature: gene Location: 2273-2587 bp Feature: domain Description: PRK01565 Location: 2276-2564 bp Feature: domain Description: PRK01565 Location: 2276-2564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01565 (thiamine biosynthesis protein ThiI; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WTAI01000142.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000420716, whole genome shotgun sequence (2716 bp)
Overview 1 RT 1: 337-2640 bp Neighborhood of RT #1 [337, 2714] HTH_32 DDE_3 RVT_N RVT-GII Feature: gene Location: 337-1491 bp Feature: domain Description: HTH_32 Location: 529-787 bp Feature: domain Description: HTH_32 Location: 529 -787 bp Feature: domain Description: DDE_3 Location: 946-1384 bp Feature: domain Description: DDE_3 Location: 9 46-1384 bp Feature: gene Location: 1617-2714 bp Feature: RT Description: RVT_N Location: 1704-1944 bp Feature: RT Description: RVT_N Location: 1704-19 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1992-2640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19 9 2-2640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HTH_32 (pfam13565), DDE_3 (pfam13358)

Seq: WTAI01000454.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000533451, whole genome shotgun sequence (2600 bp)
Overview 1 RT 1: 776-2594 bp Neighborhood of RT #1 [776, 2599] RVT-GII GIIM Feature: gene Location: 776-1018 bp Feature: gene Location: 1141-1374 bp Feature: gene Location: 1481-2599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736-2357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736-2357 bp Feature: domain Description: GIIM Note: maturase Location: 2399-2594 bp Feature: domain Description: GIIM Note: maturase Location: 2399-2594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WTAI01000230.1 Methanosarcinaceae archaeon isolate GLR1503 c_000000640024, whole genome shotgun sequence (2703 bp)
Overview 1 RT 1: 2-2435 bp Neighborhood of RT #1 [2, 2435] archaeo_AfpA RVT_N RVT-GII GIIM Feature: gene Location: 2-295 bp Feature: domain Description: archaeo_AfpA Location: 5-278 bp Feature: domain Description: archaeo_AfpA Location: 5-278 bp Feature: gene Location: 633-2135 bp Feature: RT Description: RVT_N Location: 702-945 bp Feature: RT Description: RVT_N Location: 702-945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993-1647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 993-1647 bp Feature: domain Description: GIIM Note: maturase Location: 1704-1932 bp Feature: domain Description: GIIM Note: maturase Location: 1704-1932 bp Feature: gene Location: 2256-2435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT archaeo_AfpA (TIGR02699), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)