myRT

myRT report for GCA_013140935.1_ASM1314093v1

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Seq: JABFSD010001111.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_2037, whole genome shotgun sequence (9766 bp)
Overview 1 RT 1: 2-4591 bp Neighborhood of RT #1 [2, 4591] ABC_Org_Solvent_Resistant DZR RDD DZR RVT-CRISPR-like RVT-CRISPR-like RpoE Feature: gene Location: 2-928 bp Feature: domain Description: ABC_Org_Solvent_Resistant Location: 68-683 bp Feature: domain Description: ABC_Org_Solvent_Resistant Location: 68-683 bp Feature: gene Location: 1008-1847 bp Feature: domain Description: DZR Location: 1107-1170 bp Feature: domain Description: DZR Location: 1 1 07-1 1 70 bp Feature: domain Description: RDD Location: 1212-1599 bp Feature: domain Description: RDD Location: 1 21 2-1 599 bp Feature: domain Description: DZR Location: 1704-1806 bp Feature: domain Description: DZR Location: 1 704-1 806 bp Feature: gene Location: 1861-3171 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2098-2401 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2098-2401 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2758-2995 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2758-2995 bp Feature: gene Location: 3289-3963 bp Feature: domain Description: RpoE Location: 3409-3940 bp Feature: domain Description: RpoE Location: 3409-3940 bp Feature: gene Location: 3986-4591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_Org_Solvent_Resistant (cd03261), DZR (pfam12773), RDD (pfam06271), RVT-CRISPR, RpoE (COG3343)

Seq: JABFSD010000364.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_28133, whole genome shotgun sequence (2604 bp)
Overview 1 RT 1: 3-2239 bp Neighborhood of RT #1 [3, 2571] RVT-Retrons Feature: gene Location: 3-650 bp Feature: gene Location: 1018-2571 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1621-2239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162 1-2 2 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JABFSD010000413.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_3412, whole genome shotgun sequence (7541 bp)
Overview 1 RT 1: 1605-4806 bp Neighborhood of RT #1 [1605, 4910] RVT-DGRs Avd_like HRDC Feature: gene Location: 1605-2459 bp Feature: gene Location: 2477-2623 bp Feature: gene Location: 2790-3794 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3000-3600 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 000-3 600 bp Feature: gene Location: 3791-4171 bp Feature: domain Description: Avd_like Location: 3833-4139 bp Feature: domain Description: Avd_like Location: 3 83 3 -413 9 bp Feature: gene Location: 4347-4910 bp Feature: domain Description: HRDC Location: 4620-4806 bp Feature: domain Description: HRDC Location: 4620-4806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: JABFSD010000245.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_4853, whole genome shotgun sequence (6299 bp)
Overview 1 RT 1: 108-5128 bp Neighborhood of RT #1 [108, 5271] ADOP RVT-GII GIIM MFS_MdfA_MDR_like GadA Feature: gene Location: 108-536 bp Feature: domain Description: ADOP Location: 114-534 bp Feature: domain Description: ADOP Location: 114 -534 bp Feature: gene Location: 1127-2143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1205-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1205-1568 bp Feature: domain Description: GIIM Note: maturase Location: 1667-1829 bp Feature: domain Description: GIIM Note: maturase Location: 1667-1829 bp Feature: gene Location: 2501-3742 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 2534-3668 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 2534 -3668 bp Feature: gene Location: 3880-5271 bp Feature: domain Description: GadA Location: 4039-5128 bp Feature: domain Description: GadA Location: 4 039-5128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, GIIM (pfam08388), MFS_MdfA_MDR_like (cd17320), GadA (COG0076)

Seq: JABFSD010000044.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_5659, whole genome shotgun sequence (5846 bp)
Overview 1 RT 1: 629-4397 bp Neighborhood of RT #1 [629, 4432] XisH XisI RVT-UG19 COG4323 Feature: gene Location: 629-817 bp Feature: domain Description: XisH Location: 632-758 bp Feature: domain Description: XisH Location: 632-75 8 bp Feature: gene Location: 927-1262 bp Feature: domain Description: XisI Location: 930-1257 bp Feature: domain Description: XisI Location: 930-125 7 bp Feature: gene Location: 1350-3437 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1719-2202 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1719-2202 bp Feature: gene Location: 3651-4043 bp Feature: gene Location: 4100-4432 bp Feature: domain Description: COG4323 Location: 4106-4397 bp Feature: domain Description: COG4323 Location: 4106-4397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XisH (pfam08814), XisI (pfam08869), RVT-UG19, COG4323 (Uncharacterized protein )

Seq: JABFSD010000492.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_7666, whole genome shotgun sequence (5034 bp)
Overview 1 RT 1: 520-5027 bp Neighborhood of RT #1 [520, 5032] TPR_12 YfmG nirV Avd_like RVT-DGRs COG5368 Feature: gene Location: 520-1770 bp Feature: domain Description: TPR_12 Location: 613-754 bp Feature: domain Description: TPR_12 Location: 6 13-754 bp Feature: domain Description: YfmG Location: 841-1741 bp Feature: domain Description: YfmG Location: 841-1741 bp Feature: gene Location: 1838-2560 bp Feature: domain Description: nirV Location: 1922-2024 bp Feature: domain Description: nirV Location: 1922-2024 bp Feature: domain Description: Avd_like Location: 2234-2540 bp Feature: domain Description: Avd_like Location: 2234-2540 bp Feature: gene Location: 2557-3615 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2767-3409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 276 7-3409 bp Feature: gene Location: 3735-4160 bp Feature: gene Location: 4307-5032 bp Feature: domain Description: COG5368 Location: 4397-5027 bp Feature: domain Description: COG536 8 Location: 4397-5027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), YfmG (COG1262), nirV (LOAD_nirV), Avd_like (cd16376), RVT-DGRs, COG5368 (Uncharacterized protein )

Seq: JABFSD010000864.1 Acidobacteria bacterium isolate S-RSF-IL-17 seq_799, whole genome shotgun sequence (15901 bp)
Overview 1 RT 1: 1206-10683 bp Neighborhood of RT #1 [1206, 10683] TPR TPR Peptidase_C39_2 TPR TPR TPR TPR TPR_19 TPR TPR TPR YckC RVT-CRISPR-like RVT-CRISPR-like Feature: gene Location: 1206-6488 bp Feature: domain Description: TPR Location: 1341-1725 bp Feature: domain Description: TPR Location: 1341-17 25 bp Feature: domain Description: TPR Location: 1758-2040 bp Feature: domain Description: TPR Location: 17 58-2040 bp Feature: domain Description: Peptidase_C39_2 Location: 2124-2448 bp Feature: domain Description: Peptidase_C39_2 Location: 2124-2448 bp Feature: domain Description: TPR Location: 3159-3294 bp Feature: domain Description: TPR Location: 3159-3294 bp Feature: domain Description: TPR Location: 3354-3606 bp Feature: domain Description: TPR Location: 3354-3606 bp Feature: domain Description: TPR Location: 3858-4113 bp Feature: domain Description: TPR Location: 3858-4113 bp Feature: domain Description: TPR Location: 4284-4467 bp Feature: domain Description: TPR Location: 4284-4467 bp Feature: domain Description: TPR_19 Location: 4497-4653 bp Feature: domain Description: TPR_19 Location: 4497 -4653 bp Feature: domain Description: TPR Location: 4758-5019 bp Feature: domain Description: TPR Location: 47 58-5019 bp Feature: domain Description: TPR Location: 5070-5337 bp Feature: domain Description: TPR Location: 507 0-5337 bp Feature: domain Description: TPR Location: 5883-6069 bp Feature: domain Description: TPR Location: 5883-6069 bp Feature: gene Location: 6800-7498 bp Feature: domain Description: YckC Location: 6986-7478 bp Feature: domain Description: YckC Location: 6986-7 47 8 bp Feature: gene Location: 7536-8687 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 7752-8019 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 7 7 52-8019 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8439-8655 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8439-8655 bp Feature: gene Location: 8693-9952 bp Feature: gene Location: 9970-10683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), Peptidase_C39_2 (pfam13529), TPR_19 (pfam14559), YckC (COG1714), RVT-CRISPR