myRT

myRT report for GCA_013141205.1_ASM1314120v1

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Seq: JABFRI010000224.1 Nitrospira sp. isolate P-RSF-IL-20 seq_10576, whole genome shotgun sequence (3664 bp)
Overview 1 RT 1: 205-3485 bp Neighborhood of RT #1 [205, 3514] HicB RVT-AbiP2 PHA02517 InsE Feature: gene Location: 205-426 bp Feature: domain Description: HicB Location: 217-394 bp Feature: domain Description: HicB Location: 21 7-394 bp Feature: gene Location: 967-2166 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1105-1567 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 1 05-1 567 bp Feature: gene Location: 2331-3161 bp Feature: domain Description: PHA02517 Location: 2445-3141 bp Feature: domain Description: PHA0251 7 Location: 2445-31 41 bp Feature: gene Location: 3158-3514 bp Feature: domain Description: InsE Location: 3221-3485 bp Feature: domain Description: InsE Location: 3221 -3485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT-AbiP2, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JABFRI010000282.1 Nitrospira sp. isolate P-RSF-IL-20 seq_5005, whole genome shotgun sequence (6225 bp)
Overview 1 RT 1: 487-2988 bp Neighborhood of RT #1 [487, 2988] RVT-GII GIIM PRK00215 Feature: gene Location: 487-1863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823-1438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 3-1438 bp Feature: domain Description: GIIM Note: maturase Location: 1495-1708 bp Feature: domain Description: GIIM Note: maturase Location: 1495-1708 bp Feature: gene Location: 1943-2155 bp Feature: domain Description: PRK00215 Location: 1964-2147 bp Feature: domain Description: PRK002 15 Location: 1964-2 147 bp Feature: gene Location: 2614-2988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK00215 (transcriptional repressor LexA)

Seq: JABFRI010000116.1 Nitrospira sp. isolate P-RSF-IL-20 seq_5103, whole genome shotgun sequence (6123 bp)
Overview 1 RT 1: 124-2131 bp Neighborhood of RT #1 [124, 2151] RVT-Retrons COG5606 Feature: gene Location: 124-1194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130-478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 0-478 bp Feature: gene Location: 1630-1791 bp Feature: gene Location: 1855-2151 bp Feature: domain Description: COG5606 Location: 1879-2131 bp Feature: domain Description: COG5606 Location: 1879-213 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG5606 (Predicted DNA-binding protein, XRE-type HTH domain )

Seq: JABFRI010000290.1 Nitrospira sp. isolate P-RSF-IL-20 seq_5947, whole genome shotgun sequence (5527 bp)
Overview 1 RT 1: 2-1465 bp Neighborhood of RT #1 [2, 1473] RVT-GII group_II_RT_mat COG3797 Feature: gene Location: 2-325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-200 bp Feature: gene Location: 322-843 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 337-670 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 337-670 bp Feature: gene Location: 958-1473 bp Feature: domain Description: COG3797 Location: 961-1465 bp Feature: domain Description: COG3797 Location: 961-14 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), COG3797 (Uncharacterized conserved protein, DUF1697 family )

Seq: JABFRI010000417.1 Nitrospira sp. isolate P-RSF-IL-20 seq_9106, whole genome shotgun sequence (4073 bp)
Overview 1 RT 1: 1-1826 bp Neighborhood of RT #1 [1, 1828] RVT-GII HxlR Feature: gene Location: 1-618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385 -619 bp Feature: gene Location: 1185-1346 bp Feature: gene Location: 1511-1828 bp Feature: domain Description: HxlR Location: 1529-1826 bp Feature: domain Description: HxlR Location: 15 29-1826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HxlR (pfam01638)