myRT

myRT report for GCA_013141295.1_ASM1314129v1

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Seq: JABFRG010000606.1 Polyangiaceae bacterium isolate P-RSF-IL-17 seq_2152, whole genome shotgun sequence (11097 bp)
Overview 1 RT 1: 1670-6987 bp Neighborhood of RT #1 [1670, 6987] KOG1208 RVT-Retrons SWIM Feature: gene Location: 1670-2590 bp Feature: gene Location: 2603-3505 bp Feature: domain Description: KOG1208 Location: 2630-3500 bp Feature: domain Description: KOG1 208 Location: 2630-3500 bp Feature: gene Location: 3518-5044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4055-4670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4055-4670 bp Feature: gene Location: 5352-6998 bp Feature: domain Description: SWIM Location: 6873-6960 bp Feature: domain Description: SWIM Location: 6873-6960 bp Feature: gene Location: 6853-6987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1208 (KOG1208, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) ), RVT-Retrons, SWIM (pfam04434)

Seq: JABFRG010000829.1 Polyangiaceae bacterium isolate P-RSF-IL-17 seq_3672, whole genome shotgun sequence (7767 bp)
Overview 1 RT 1: 103-4281 bp Neighborhood of RT #1 [103, 4281] PRK13800 Aldo_ket_red RVT-Retrons AbiEii Feature: gene Location: 103-1494 bp Feature: domain Description: PRK13800 Location: 133-406 bp Feature: domain Description: PRK13800 Location: 133-406 bp Feature: domain Description: Aldo_ket_red Location: 637-1342 bp Feature: domain Description: Aldo_ket_red Location: 637-1342 bp Feature: gene Location: 1679-3151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2324-2903 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 32 4-2 903 bp Feature: gene Location: 3423-3977 bp Feature: domain Description: AbiEii Location: 3489-3879 bp Feature: domain Description: AbiEii Location: 3489-3879 bp Feature: gene Location: 3982-4281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13800 (fumarate reductase/succinate dehydrogenase flavoprotein subunit), Aldo_ket_red (pfam00248), RVT-Retrons, AbiEii (pfam08843)

Seq: JABFRG010000265.1 Polyangiaceae bacterium isolate P-RSF-IL-17 seq_4684, whole genome shotgun sequence (6514 bp)
Overview 1 RT 1: 3-5876 bp Neighborhood of RT #1 [3, 6046] RVT-Retrons ArsA ArsA RnjA Feature: gene Location: 3-230 bp Feature: gene Location: 463-711 bp Feature: gene Location: 918-2249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1362-2019 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 62-2019 bp Feature: gene Location: 3419-4756 bp Feature: domain Description: ArsA Location: 3863-4325 bp Feature: domain Description: ArsA Location: 3 863 -43 25 bp Feature: domain Description: ArsA Location: 4346-4547 bp Feature: domain Description: ArsA Location: 43 46-4547 bp Feature: gene Location: 4433-6046 bp Feature: domain Description: RnjA Location: 4439-5876 bp Feature: domain Description: RnjA Location: 443 9-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArsA (COG0003), RnjA (COG0595), RVT-Retrons