myRT

myRT report for GCA_013141715.1_ASM1314171v1

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Seq: WHOA01000098.1 Paenibacillus sp. LMG 31458 Contig_117_64.84, whole genome shotgun sequence (67082 bp)
Overview 1 RT 1: 32488-36941 bp Neighborhood of RT #1 [32488, 36941] RimL Beta-lactamase RVT-GII group_II_RT_mat Feature: gene Location: 32488-33039 bp Feature: domain Description: RimL Location: 32509-33037 bp Feature: domain Description: RimL Location: 32509-33037 bp Feature: gene Location: 33229-34308 bp Feature: domain Description: Beta-lactamase Location: 33292-34249 bp Feature: domain Description: Beta-lactamase Location: 33292-34249 bp Feature: gene Location: 34783-35955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34789-35323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34789-35323 bp Feature: gene Location: 36149-36370 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36236-36359 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36236-36359 bp Feature: gene Location: 36696-36941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), Beta-lactamase (pfam00144), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: WHOA01000113.1 Paenibacillus sp. LMG 31458 Contig_133_128.446, whole genome shotgun sequence (1851 bp)
Overview 1 RT 1: 15-1849 bp Neighborhood of RT #1 [15, 1849] RVT-GII GIIM Feature: gene Location: 15-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 1-957 bp Feature: domain Description: GIIM Note: maturase Location: 1035-1275 bp Feature: domain Description: GIIM Note: maturase Location: 1035-12 75 bp Feature: gene Location: 1484-1849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WHOA01000128.1 Paenibacillus sp. LMG 31458 Contig_151_85.3028, whole genome shotgun sequence (6231 bp)
Overview 1 RT 1: 2680-6058 bp Neighborhood of RT #1 [2680, 6078] GIIM RVT-GII AcrR Feature: gene Location: 2680-3189 bp Feature: gene Location: 3344-3769 bp Feature: domain Description: GIIM Note: maturase Location: 3410-3653 bp Feature: domain Description: GIIM Note: maturase Location: 3 410-3 653 bp Feature: gene Location: 3806-4726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4112-4709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4112-4709 bp Feature: gene Location: 4760-5218 bp Feature: gene Location: 5434-6078 bp Feature: domain Description: AcrR Location: 5500-6058 bp Feature: domain Description: AcrR Location: 5500-6058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, AcrR (COG1309)

Seq: WHOA01000017.1 Paenibacillus sp. LMG 31458 Contig_15_309.211, whole genome shotgun sequence (1221 bp)
Overview 1 RT 1: 420-1164 bp Neighborhood of RT #1 [420, 1220] RVT-GII Feature: gene Location: 420-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711-1164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WHOA01000156.1 Paenibacillus sp. LMG 31458 Contig_188_221.995, whole genome shotgun sequence (1041 bp)
Overview 1 RT 1: 1-832 bp Neighborhood of RT #1 [1, 960] RVT-GII HNHc Feature: gene Location: 1-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-15 7 bp Feature: domain Description: HNHc Note: nucleases Location: 712-832 bp Feature: domain Description: HNHc Note: nucleases Location: 712-832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WHOA01000157.1 Paenibacillus sp. LMG 31458 Contig_189_116.143, whole genome shotgun sequence (1301 bp)
Overview 1 RT 1: 1-1182 bp Neighborhood of RT #1 [1, 1182] RVT-GII HNHc Feature: gene Location: 1-129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-124 bp Feature: gene Location: 259-960 bp Feature: domain Description: HNHc Note: nucleases Location: 712-829 bp Feature: domain Description: HNHc Note: nucleases Location: 712-829 bp Feature: gene Location: 1015-1182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: WHOA01000162.1 Paenibacillus sp. LMG 31458 Contig_195_83.1516, whole genome shotgun sequence (10561 bp)
Overview 1 RT 1: 265-4825 bp Neighborhood of RT #1 [265, 5121] mraY RVT-GII HNHc RVT-GII STKc_PLK1 Feature: gene Location: 265-1227 bp Feature: domain Description: mraY Location: 289-1207 bp Feature: domain Description: mraY Location: 289-1207 bp Feature: gene Location: 1722-2684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1755-1881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 55-1881 bp Feature: domain Description: HNHc Note: nucleases Location: 2436-2553 bp Feature: domain Description: HNHc Note: nucleases Location: 2436-2553 bp Feature: gene Location: 2476-3516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2767-3352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 67 -3352 bp Feature: gene Location: 3763-3927 bp Feature: gene Location: 4270-5121 bp Feature: domain Description: STKc_PLK1 Location: 4531-4825 bp Feature: domain Description: STKc_PLK1 Location: 4531-4825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mraY (TIGR00445), RVT-GII, HNHc (smart00507), STKc_PLK1 (cd14187)

Seq: WHOA01000178.1 Paenibacillus sp. LMG 31458 Contig_217_65.0028, whole genome shotgun sequence (9760 bp)
Overview 1 RT 1: 2176-5022 bp Neighborhood of RT #1 [2176, 5022] RVT-GII GIIM RVT-GII Feature: gene Location: 2176-2382 bp Feature: gene Location: 2413-2589 bp Feature: gene Location: 2777-3442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2780-3083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278 0-308 3 bp Feature: domain Description: GIIM Note: maturase Location: 3173-3380 bp Feature: domain Description: GIIM Note: maturase Location: 3173-338 0 bp Feature: gene Location: 3473-4069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3773-4067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3773-4067 bp Feature: gene Location: 4577-4801 bp Feature: gene Location: 4861-5022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WHOA01000182.1 Paenibacillus sp. LMG 31458 Contig_221_66.1582, whole genome shotgun sequence (83259 bp)
Overview 1 RT 1: 7477-11389 bp Neighborhood of RT #1 [7477, 11389] COG4994 RVT-GII Feature: gene Location: 7477-7746 bp Feature: gene Location: 7809-8135 bp Feature: domain Description: COG4994 Location: 7815-8121 bp Feature: domain Description: COG49 9 4 Location: 7815-8121 bp Feature: gene Location: 8898-10658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9156-9855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 156-9 855 bp Feature: gene Location: 10940-11074 bp Feature: gene Location: 11084-11389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4994 (Uncharacterized protein ), RVT-GII

Seq: WHOA01000204.1 Paenibacillus sp. LMG 31458 Contig_252_58.0855, whole genome shotgun sequence (18246 bp)
Overview 1 RT 1: 2116-8169 bp Neighborhood of RT #1 [2116, 9521] rve Mu-transpos_C TniB RVT-GII GIIM TniQ Feature: gene Location: 2116-4215 bp Feature: domain Description: rve Location: 2860-3274 bp Feature: domain Description: rve Location: 2860-3274 bp Feature: domain Description: Mu-transpos_C Location: 3529-3724 bp Feature: domain Description: Mu-transpos_C Location: 3529-3724 bp Feature: gene Location: 4212-5255 bp Feature: domain Description: TniB Location: 4299-4836 bp Feature: domain Description: TniB Location: 4299-4836 bp Feature: gene Location: 5957-7021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6152-6770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6152-6770 bp Feature: domain Description: GIIM Note: maturase Location: 6821-6938 bp Feature: domain Description: GIIM Note: maturase Location: 6821-6938 bp Feature: gene Location: 7453-7776 bp Feature: gene Location: 7782-9521 bp Feature: domain Description: TniQ Location: 7812-8169 bp Feature: domain Description: TniQ Location: 7812-8169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), Mu-transpos_C (pfam09299), TniB (pfam05621), RVT-GII, GIIM (pfam08388), TniQ (pfam06527)

Seq: WHOA01000245.1 Paenibacillus sp. LMG 31458 Contig_298_69.2928, whole genome shotgun sequence (8460 bp)
Overview 1 RT 1: 288-3238 bp Neighborhood of RT #1 [288, 3238] RVT-GII GIIM PRK14804 Feature: gene Location: 288-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1308-1551 bp Feature: domain Description: GIIM Note: maturase Location: 1308-1551 bp Feature: gene Location: 2281-3081 bp Feature: domain Description: PRK14804 Location: 2284-3061 bp Feature: domain Description: PRK14804 Location: 2284-3061 bp Feature: gene Location: 3056-3238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK14804 (ornithine carbamoyltransferase; Provisional)