myRT

myRT report for GCA_013141915.1_ASM1314191v1

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Seq: SROX01000016.1 Cupriavidus necator strain SHC 2-3 NODE_16_length_156823_cov_89.419226, whole genome shotgun sequence (156823 bp)
Overview 1 RT 1: 44499-48635 bp Neighborhood of RT #1 [44499, 48652] COG3547 RVT-GII GIIM RVT_N RVT-GII COG3544 Feature: gene Location: 44499-44630 bp Feature: gene Location: 44666-45265 bp Feature: domain Description: COG3547 Location: 44768-45179 bp Feature: domain Description: COG3547 Location: 44768-451 79 bp Feature: gene Location: 45256-46086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45289-45580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45289-45580 bp Feature: domain Description: GIIM Note: maturase Location: 45631-45865 bp Feature: domain Description: GIIM Note: maturase Location: 45631 -45865 bp Feature: gene Location: 45995-46756 bp Feature: RT Description: RVT_N Location: 46058-46292 bp Feature: RT Description: RVT_N Location: 46058-46292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46346-46712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46346-4671 2 bp Feature: gene Location: 47523-47831 bp Feature: gene Location: 48257-48652 bp Feature: domain Description: COG3544 Location: 48374-48635 bp Feature: domain Description: COG3544 Location: 48374-48635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), COG3544 (Uncharacterized conserved protein, DUF305 family )

Seq: SROX01000002.1 Cupriavidus necator strain SHC 2-3 NODE_2_length_645175_cov_103.230577, whole genome shotgun sequence (645175 bp)
Overview 1 RT 1: 301687-307090 bp Neighborhood of RT #1 [301687, 307092] PhyH PRK13623 RVT-GII GIIM HNHc CcmA rpsI Feature: gene Location: 301687-302484 bp Feature: domain Description: PhyH Location: 301711-302470 bp Feature: domain Description: PhyH Location: 301711-302 470 bp Feature: gene Location: 302546-302914 bp Feature: domain Description: PRK13623 Location: 302579-302912 bp Feature: domain Description: PRK1362 3 Location: 302 579-302 912 bp Feature: gene Location: 303027-304352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303030-303648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303030-303648 bp Feature: domain Description: GIIM Note: maturase Location: 303699-303933 bp Feature: domain Description: GIIM Note: maturase Location: 303699-303933 bp Feature: domain Description: HNHc Note: nucleases Location: 304152-304317 bp Feature: domain Description: HNHc Note: nucleases Location: 304152 -304317 bp Feature: gene Location: 305954-306442 bp Feature: domain Description: CcmA Location: 305966-306332 bp Feature: domain Description: CcmA Location: 305966-306332 bp Feature: gene Location: 306700-307092 bp Feature: domain Description: rpsI Location: 306712-307090 bp Feature: domain Description: rpsI Location: 306712 -307090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhyH (pfam05721), PRK13623 (iron-sulfur cluster insertion protein ErpA; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), CcmA (COG4133), rpsI (PRK00132)

Seq: SROX01000003.1 Cupriavidus necator strain SHC 2-3 NODE_3_length_425452_cov_83.917790, whole genome shotgun sequence (425452 bp)
Overview 1 RT 1: 160597-164116 bp Neighborhood of RT #1 [160597, 164116] PRTRC_D RVT-GII GIIM DUF5372 Feature: gene Location: 160597-161598 bp Feature: domain Description: PRTRC_D Location: 160618-161575 bp Feature: domain Description: PRTRC_D Location: 160618-161575 bp Feature: gene Location: 161610-162092 bp Feature: gene Location: 162392-163426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162407-162995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162407-162995 bp Feature: domain Description: GIIM Note: maturase Location: 163046-163256 bp Feature: domain Description: GIIM Note: maturase Location: 163 046-163 256 bp Feature: gene Location: 163273-163731 bp Feature: domain Description: DUF5372 Location: 163462-163693 bp Feature: domain Description: DUF53 72 Location: 163 462-163 693 bp Feature: gene Location: 163841-164116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_D (TIGR03739), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)

Seq: SROX01000008.1 Cupriavidus necator strain SHC 2-3 NODE_8_length_296635_cov_103.925869, whole genome shotgun sequence (296635 bp)
Overview 1 RT 1: 168325-173902 bp Neighborhood of RT #1 [168325, 173910] ispH SlpA RVT-GII GIIM HNH PRK00024 RpmB Feature: gene Location: 168325-169290 bp Feature: domain Description: ispH Location: 168358-169243 bp Feature: domain Description: ispH Location: 168358-16924 3 bp Feature: gene Location: 169327-169815 bp Feature: domain Description: SlpA Location: 169384-169810 bp Feature: domain Description: SlpA Location: 169384 -169810 bp Feature: gene Location: 169926-171227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169929-170517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169929-170517 bp Feature: domain Description: GIIM Note: maturase Location: 170568-170802 bp Feature: domain Description: GIIM Note: maturase Location: 170568-170802 bp Feature: domain Description: HNH Note: nucleases Location: 171054-171192 bp Feature: domain Description: HNH Note: nucleases Location: 171054 -171192 bp Feature: gene Location: 172794-173486 bp Feature: domain Description: PRK00024 Location: 172803-173463 bp Feature: domain Description: PRK00024 Location: 172803-1734 63 bp Feature: gene Location: 173713-173910 bp Feature: domain Description: RpmB Location: 173716-173902 bp Feature: domain Description: RpmB Location: 173716-173902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispH (PRK01045), SlpA (COG1047), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK00024 (DNA repair protein RadC), RpmB (COG0227)