myRT

myRT report for GCA_013149325.1_ASM1314932v1

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Seq: JABFUS010000001.1 Clostridium saccharobutylicum strain DJ096 Ga0423255_01, whole genome shotgun sequence (4814129 bp)
Overview 1 RT 1: 2451957-2459866 bp 2 RT 2: 2574184-2582902 bp 3 RT 3: 3214170-3217332 bp Neighborhood of RT #1 [2451957, 2459866] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #2 [2574184, 2582902] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #3 [3214170, 3217370] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 2451957-2454524 bp Feature: domain Description: UvrD Location: 2452479-2453607 bp Feature: domain Description: UvrD Location: 2452479-2453607 bp Feature: domain Description: UvrD Location: 2453784-2454024 bp Feature: domain Description: UvrD Location: 2453784-2454024 bp Feature: gene Location: 2454810-2455817 bp Feature: gene Location: 2456029-2457153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2456245-2456803 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2456245-2456803 bp Feature: gene Location: 2457455-2458759 bp Feature: domain Description: Enpp Location: 2457473-2458709 bp Feature: domain Description: Enpp Location: 2457473-2458709 bp Feature: gene Location: 2459330-2459866 bp Feature: gene Location: 2574184-2574711 bp Feature: domain Description: Sig70_famx3 Location: 2574190-2574673 bp Feature: domain Description: Sig70_famx3 Location: 25741 90-2574673 bp Feature: gene Location: 2574930-2575955 bp Feature: domain Description: DUF1835 Location: 2574945-2575314 bp Feature: domain Description: DUF1 835 Location: 2574945-257531 4 bp Feature: domain Description: DUF3658 Location: 2575404-2575716 bp Feature: domain Description: DUF3658 Location: 2575404-257571 6 bp Feature: gene Location: 2576543-2578048 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2577179-2577821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25771 79-2577821 bp Feature: gene Location: 2578045-2579853 bp Feature: gene Location: 2579855-2582902 bp Feature: gene Location: 3214170-3214304 bp Feature: gene Location: 3214772-3215179 bp Feature: gene Location: 3215613-3216251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3215949-3216132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 5949-321 61 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3216135-3216240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 61 35-321 6240 bp Feature: gene Location: 3216722-3217072 bp Feature: gene Location: 3217164-3217370 bp Feature: domain Description: DDE_Tnp_1 Location: 3217194-3217332 bp Feature: domain Description: DDE_Tnp_1 Location: 321 71 94-321 7332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018), Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABFUS010000002.1 Clostridium saccharobutylicum strain DJ096 Ga0423255_02, whole genome shotgun sequence (109643 bp)
Overview 1 RT 1: 25032-29626 bp Neighborhood of RT #1 [25032, 29928] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Feature: gene Location: 25032-25298 bp Feature: domain Description: plantaricin Location: 25053-25296 bp Feature: domain Description: plantaricin Location: 2 5053-2 52 96 bp Feature: gene Location: 25343-25609 bp Feature: domain Description: plantaricin Location: 25364-25607 bp Feature: domain Description: plantaricin Location: 2 5364-2 5607 bp Feature: gene Location: 25683-27218 bp Feature: RT Description: RVT_N Location: 25755-25998 bp Feature: RT Description: RVT_N Location: 2 5755-2 5998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26043-26703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6043-2 6703 bp Feature: domain Description: GIIM Note: maturase Location: 26754-26991 bp Feature: domain Description: GIIM Note: maturase Location: 2 6754-2 6991 bp Feature: domain Description: rve_2 Location: 27135-27210 bp Feature: domain Description: rve_2 Location: 2 7135-2 72 10 bp Feature: gene Location: 27744-28601 bp Feature: domain Description: PHA02517 Location: 28032-28581 bp Feature: domain Description: PHA02 517 Location: 2 8032 -2 8581 bp Feature: gene Location: 28660-29928 bp Feature: domain Description: DDE_Tnp_1 Location: 29011-29626 bp Feature: domain Description: DDE_Tnp_1 Location: 2 9011-2 962 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609)