myRT

myRT report for GCA_013149365.1_ASM1314936v1

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Seq: JABFUU010000001.1 Clostridium saccharobutylicum strain DJ111 Ga0423265_01, whole genome shotgun sequence (4954876 bp)
Overview 1 RT 1: 2529261-2537170 bp 2 RT 2: 2651490-2660208 bp 3 RT 3: 3291483-3294645 bp Neighborhood of RT #1 [2529261, 2537170] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #2 [2651490, 2660208] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #3 [3291483, 3294683] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 2529261-2531828 bp Feature: domain Description: UvrD Location: 2529783-2530911 bp Feature: domain Description: UvrD Location: 2529783-253091 1 bp Feature: domain Description: UvrD Location: 2531088-2531328 bp Feature: domain Description: UvrD Location: 2531 088-2531 328 bp Feature: gene Location: 2532114-2533121 bp Feature: gene Location: 2533333-2534457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2533549-2534107 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2533549-25341 07 bp Feature: gene Location: 2534759-2536063 bp Feature: domain Description: Enpp Location: 2534777-2536013 bp Feature: domain Description: Enpp Location: 2534777-253601 3 bp Feature: gene Location: 2536634-2537170 bp Feature: gene Location: 2651490-2652017 bp Feature: domain Description: Sig70_famx3 Location: 2651496-2651979 bp Feature: domain Description: Sig70_famx3 Location: 2651 496-2651 979 bp Feature: gene Location: 2652236-2653261 bp Feature: domain Description: DUF1835 Location: 2652251-2652620 bp Feature: domain Description: DUF1 835 Location: 2652251 -2652620 bp Feature: domain Description: DUF3658 Location: 2652710-2653022 bp Feature: domain Description: DUF3658 Location: 265271 0-2653022 bp Feature: gene Location: 2653849-2655354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2654485-2655127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2654485-26551 27 bp Feature: gene Location: 2655351-2657159 bp Feature: gene Location: 2657161-2660208 bp Feature: gene Location: 3291483-3291617 bp Feature: gene Location: 3292085-3292492 bp Feature: gene Location: 3292926-3293564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293262-3293445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293262-3293445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293448-3293553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293448-3293553 bp Feature: gene Location: 3294035-3294385 bp Feature: gene Location: 3294477-3294683 bp Feature: domain Description: DDE_Tnp_1 Location: 3294507-3294645 bp Feature: domain Description: DDE_Tnp_1 Location: 3294507-3294645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018), Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: JABFUU010000002.1 Clostridium saccharobutylicum strain DJ111 Ga0423265_02, whole genome shotgun sequence (109551 bp)
Overview 1 RT 1: 26361-30955 bp Neighborhood of RT #1 [26361, 31257] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Feature: gene Location: 26361-26627 bp Feature: domain Description: plantaricin Location: 26382-26625 bp Feature: domain Description: plantaricin Location: 2 6382 -2 662 5 bp Feature: gene Location: 26672-26938 bp Feature: domain Description: plantaricin Location: 26693-26936 bp Feature: domain Description: plantaricin Location: 2 6693-2 6936 bp Feature: gene Location: 27012-28547 bp Feature: RT Description: RVT_N Location: 27084-27327 bp Feature: RT Description: RVT_N Location: 2 7084-2 732 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27372-28032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7372 -2 8032 bp Feature: domain Description: GIIM Note: maturase Location: 28083-28320 bp Feature: domain Description: GIIM Note: maturase Location: 2 8083-2 832 0 bp Feature: domain Description: rve_2 Location: 28464-28539 bp Feature: domain Description: rve_2 Location: 2 8464-2 8539 bp Feature: gene Location: 29073-29930 bp Feature: domain Description: PHA02517 Location: 29361-29910 bp Feature: domain Description: PHA02 517 Location: 2 9361-2 9910 bp Feature: gene Location: 29989-31257 bp Feature: domain Description: DDE_Tnp_1 Location: 30340-30955 bp Feature: domain Description: DDE_Tnp_1 Location: 30340-30955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609)