myRT

myRT report for GCA_013149425.1_ASM1314942v1

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Seq: JABFUP010000001.1 Clostridium beijerinckii strain DJ091 Ga0423251_01, whole genome shotgun sequence (2967463 bp)
Overview 1 RT 1: 1377992-1383793 bp 2 RT 2: 2657006-2665022 bp 3 RT 3: 2703388-2707766 bp Neighborhood of RT #1 [1377992, 1384137] ComA-like_MBL-fold RVT-UG12 HTH_XRE Neighborhood of RT #2 [2657006, 2665024] Peptidases_S8_CspA-like COG5263 RVT-GII Peptidases_S8_CspA-like DUF3787 Neighborhood of RT #3 [2703388, 2707945] COG4185 RVT-UG2 IscU Feature: gene Location: 1377992-1379173 bp Feature: domain Description: ComA-like_MBL-fold Location: 1378025-1378271 bp Feature: domain Description: ComA-like_MBL-fold Location: 1 378025-1 378271 bp Feature: gene Location: 1379500-1380708 bp Feature: gene Location: 1380918-1382444 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1381260-1381704 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 381 260-1 381 704 bp Feature: gene Location: 1382518-1383243 bp Feature: gene Location: 1383610-1384137 bp Feature: domain Description: HTH_XRE Location: 1383622-1383793 bp Feature: domain Description: HTH_XRE Location: 1 383622-1 383793 bp Feature: gene Location: 2657006-2658835 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 2657297-2658680 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 2657297-2658680 bp Feature: gene Location: 2659010-2660224 bp Feature: domain Description: COG5263 Location: 2659196-2660219 bp Feature: domain Description: COG5263 Location: 26591 96-266021 9 bp Feature: gene Location: 2660845-2661759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2661100-2661724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2661 1 00-2661 724 bp Feature: gene Location: 2662784-2664622 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 2663075-2664458 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 2663075-2664458 bp Feature: gene Location: 2664860-2665024 bp Feature: domain Description: DUF3787 Location: 2664869-2665022 bp Feature: domain Description: DUF3787 Location: 2664869-2665022 bp Feature: gene Location: 2703388-2703561 bp Feature: gene Location: 2703561-2704127 bp Feature: domain Description: COG4185 Location: 2703564-2704119 bp Feature: domain Description: COG41 85 Location: 2703564-27041 1 9 bp Feature: gene Location: 2704618-2705931 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2704810-2705632 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 270481 0-2705632 bp Feature: gene Location: 2706690-2706929 bp Feature: gene Location: 2707253-2707945 bp Feature: domain Description: IscU Location: 2707346-2707766 bp Feature: domain Description: IscU Location: 2707346-2707766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-UG12, HTH_XRE (smart00530), Peptidases_S8_CspA-like (cd07478), COG5263 (Glucan-binding domain (YG repeat) ), RVT-GII, DUF3787 (pfam12655), COG4185 (Predicted ABC-type ATPase ), RVT-UG2, IscU (COG0822)

Seq: JABFUP010000002.1 Clostridium beijerinckii strain DJ091 Ga0423251_02, whole genome shotgun sequence (2527251 bp)
Overview 1 RT 1: 854500-860689 bp 2 RT 2: 1237647-1250680 bp 3 RT 3: 1423632-1432064 bp 4 RT 4: 2129015-2135957 bp Neighborhood of RT #1 [854500, 860712] Uup Uup MntR RVT-GII DUF2325 AraC Neighborhood of RT #2 [1237647, 1250680] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like COG0610 RVT-UG5 Neighborhood of RT #3 [1423632, 1432198] YqiK RVT-GII Delta6-FADS-like CxxC_CxxC_SSSS DDE_Tnp_IS240 Neighborhood of RT #4 [2129015, 2135957] ArgO ARO8 RVT-GII Adenylsucc_synt Feature: gene Location: 854500-855978 bp Feature: domain Description: Uup Location: 854503-854740 bp Feature: domain Description: Uup Location: 854503-854740 bp Feature: domain Description: Uup Location: 854764-855973 bp Feature: domain Description: Uup Location: 854764-855973 bp Feature: gene Location: 856042-856410 bp Feature: domain Description: MntR Location: 856054-856402 bp Feature: domain Description: MntR Location: 856054-856402 bp Feature: gene Location: 857073-857987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857328-857952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85732 8-857952 bp Feature: gene Location: 859250-859549 bp Feature: domain Description: DUF2325 Location: 859256-859517 bp Feature: domain Description: DUF2 32 5 Location: 8592 56-859517 bp Feature: gene Location: 859771-860712 bp Feature: domain Description: AraC Location: 860386-860689 bp Feature: domain Description: AraC Location: 860386-860689 bp Feature: gene Location: 1237647-1238921 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 1237713-1238283 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 12 37713-12 382 83 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 1238340-1238916 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 12 38340-12 38916 bp Feature: gene Location: 1238937-1242023 bp Feature: domain Description: COG0610 Location: 1238964-1241355 bp Feature: domain Description: COG0610 Location: 12 38964-12 41355 bp Feature: gene Location: 1243350-1247084 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1243809-1244250 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12 43809-12 442 50 bp Feature: gene Location: 1247103-1248044 bp Feature: gene Location: 1248197-1250680 bp Feature: gene Location: 1423632-1425887 bp Feature: domain Description: YqiK Location: 1423650-1425324 bp Feature: domain Description: YqiK Location: 142 3650-142 532 4 bp Feature: gene Location: 1426435-1426566 bp Feature: gene Location: 1427135-1428049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1427390-1428014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 7390-142 8014 bp Feature: gene Location: 1429254-1430300 bp Feature: domain Description: Delta6-FADS-like Location: 1429428-1430121 bp Feature: domain Description: Delta6-FADS-like Location: 142 942 8-143012 1 bp Feature: gene Location: 1430759-1432198 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 1431104-1431206 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 1431104-14312 06 bp Feature: domain Description: DDE_Tnp_IS240 Location: 1431617-1432064 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 1431617-1432 064 bp Feature: gene Location: 2129015-2129632 bp Feature: domain Description: ArgO Location: 2129018-2129606 bp Feature: domain Description: ArgO Location: 2 12 9018-2 12 9606 bp Feature: gene Location: 2129741-2131216 bp Feature: domain Description: ARO8 Location: 2129786-2131181 bp Feature: domain Description: ARO8 Location: 2 12 9786-2 131181 bp Feature: gene Location: 2132139-2133053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132394-2133018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 132 394-2 133018 bp Feature: gene Location: 2133677-2134927 bp Feature: domain Description: Adenylsucc_synt Location: 2133725-2134616 bp Feature: domain Description: Adenylsucc_synt Location: 2 13372 5-2 134616 bp Feature: gene Location: 2135034-2135957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), MntR (COG1321), RVT-GII, DUF2325 (pfam10087), AraC (COG2207), RMtype1_S_SonII-TRD2-CR2_like (cd17246), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, YqiK (COG2268), Delta6-FADS-like (cd03506)
CxxC_CxxC_SSSS (TIGR02605), DDE_Tnp_IS240 (pfam13610), ArgO (COG1279), ARO8 (COG1167), Adenylsucc_synt (smart00788)