myRT

myRT report for GCA_013149465.1_ASM1314946v1

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Seq: JABFUI010000001.1 Clostridium saccharobutylicum strain DJ071 Ga0423237_01, whole genome shotgun sequence (5110066 bp)
Overview 1 RT 1: 34971-39565 bp 2 RT 2: 2680371-2688280 bp 3 RT 3: 2802600-2811318 bp 4 RT 4: 3442594-3445756 bp Neighborhood of RT #1 [34971, 39867] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [2680371, 2688280] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #3 [2802600, 2811318] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #4 [3442594, 3445794] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 34971-35237 bp Feature: domain Description: plantaricin Location: 34992-35235 bp Feature: domain Description: plantaricin Location: 34992-35235 bp Feature: gene Location: 35282-35548 bp Feature: domain Description: plantaricin Location: 35303-35546 bp Feature: domain Description: plantaricin Location: 35303-35546 bp Feature: gene Location: 35622-37157 bp Feature: RT Description: RVT_N Location: 35694-35937 bp Feature: RT Description: RVT_N Location: 35694-35937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35982-36642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35982-36642 bp Feature: domain Description: GIIM Note: maturase Location: 36693-36930 bp Feature: domain Description: GIIM Note: maturase Location: 36693-36930 bp Feature: domain Description: rve_2 Location: 37074-37149 bp Feature: domain Description: rve_2 Location: 37074-371 49 bp Feature: gene Location: 37683-38540 bp Feature: domain Description: PHA02517 Location: 37971-38520 bp Feature: domain Description: PHA0251 7 Location: 37971 -38520 bp Feature: gene Location: 38599-39867 bp Feature: domain Description: DDE_Tnp_1 Location: 38950-39565 bp Feature: domain Description: DDE_Tnp_1 Location: 38950-39565 bp Feature: gene Location: 2680371-2682938 bp Feature: domain Description: UvrD Location: 2680893-2682021 bp Feature: domain Description: UvrD Location: 2680893-2682021 bp Feature: domain Description: UvrD Location: 2682198-2682438 bp Feature: domain Description: UvrD Location: 26821 98-2682438 bp Feature: gene Location: 2683224-2684231 bp Feature: gene Location: 2684443-2685567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2684659-2685217 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2684659-268521 7 bp Feature: gene Location: 2685869-2687173 bp Feature: domain Description: Enpp Location: 2685887-2687123 bp Feature: domain Description: Enpp Location: 2685887-26871 23 bp Feature: gene Location: 2687744-2688280 bp Feature: gene Location: 2802600-2803127 bp Feature: domain Description: Sig70_famx3 Location: 2802606-2803089 bp Feature: domain Description: Sig70_famx3 Location: 2802606-2803089 bp Feature: gene Location: 2803346-2804371 bp Feature: domain Description: DUF1835 Location: 2803361-2803730 bp Feature: domain Description: DUF1 835 Location: 2803361 -2803730 bp Feature: domain Description: DUF3658 Location: 2803820-2804132 bp Feature: domain Description: DUF3658 Location: 2803820-28041 32 bp Feature: gene Location: 2804959-2806464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2805595-2806237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2805595-2806237 bp Feature: gene Location: 2806461-2808269 bp Feature: gene Location: 2808271-2811318 bp Feature: gene Location: 3442594-3442728 bp Feature: gene Location: 3443196-3443603 bp Feature: gene Location: 3444037-3444675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444373-3444556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444373-3444556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444559-3444664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3444559-3444664 bp Feature: gene Location: 3445146-3445496 bp Feature: gene Location: 3445588-3445794 bp Feature: domain Description: DDE_Tnp_1 Location: 3445618-3445756 bp Feature: domain Description: DDE_Tnp_1 Location: 344561 8-3445756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), UvrD (COG0210), RVT-Retrons, Enpp (cd16018)
Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)