myRT

myRT report for GCA_013149485.1_ASM1314948v1

Download annotations/find similar RTs

Seq: JABFUE010000001.1 Clostridium beijerinckii strain DJ051 Ga0423194_01, whole genome shotgun sequence (4850594 bp)
Overview 1 RT 1: 2153648-2160271 bp 2 RT 2: 4714092-4720958 bp Neighborhood of RT #1 [2153648, 2160309] DndE DNA_S_dndA DNA_S_dndA RVT-CRISPR-like MPP_1 AIPR HTH_XRE Neighborhood of RT #2 [4714092, 4720960] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII DDE_Tnp_IS66 Feature: gene Location: 2153648-2154037 bp Feature: domain Description: DndE Location: 2153660-2153975 bp Feature: domain Description: DndE Location: 21 53660-21 53975 bp Feature: gene Location: 2154034-2155224 bp Feature: domain Description: DNA_S_dndA Location: 2154043-2154385 bp Feature: domain Description: DNA_S_dndA Location: 21 54043-21 54385 bp Feature: domain Description: DNA_S_dndA Location: 2154454-2155156 bp Feature: domain Description: DNA_S_dndA Location: 21 54454-21 551 56 bp Feature: gene Location: 2155260-2158421 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2155461-2156109 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 21 55461 -21 561 09 bp Feature: domain Description: MPP_1 Location: 2157462-2158206 bp Feature: domain Description: MPP_1 Location: 21 57462-21 58206 bp Feature: gene Location: 2158691-2159866 bp Feature: domain Description: AIPR Location: 2158832-2159768 bp Feature: domain Description: AIPR Location: 21 58832-21 59768 bp Feature: gene Location: 2160043-2160309 bp Feature: domain Description: HTH_XRE Location: 2160100-2160271 bp Feature: domain Description: HTH_XRE Location: 21 601 00-21 60271 bp Feature: gene Location: 4714092-4714220 bp Feature: gene Location: 4714473-4714790 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4714488-4714596 bp Feature: domain Description: DDE_Tnp_IS66 Location: 471 4488-471 4596 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4714617-4714740 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 471 461 7-471 4740 bp Feature: gene Location: 4714966-4715625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4714969-4715176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 4969-471 51 76 bp Feature: domain Description: GIIM Note: maturase Location: 4715233-4715443 bp Feature: domain Description: GIIM Note: maturase Location: 471 5233-471 5443 bp Feature: gene Location: 4715798-4717045 bp Feature: domain Description: xerS Location: 4716161-4716275 bp Feature: domain Description: xerS Location: 471 61 61 -471 6275 bp Feature: domain Description: INT_RitA_C_like Location: 4716470-4716998 bp Feature: domain Description: INT_RitA_C_like Location: 471 6470-471 6998 bp Feature: gene Location: 4717038-4718018 bp Feature: domain Description: INT_RitB_C_like Location: 4717374-4717956 bp Feature: domain Description: INT_RitB_C_like Location: 471 7374-471 7956 bp Feature: gene Location: 4718032-4719018 bp Feature: domain Description: Phage_int_SAM_1 Location: 4718056-4718302 bp Feature: domain Description: Phage_int_SAM_1 Location: 471 8056-471 8302 bp Feature: domain Description: INT_RitC_C_like Location: 4718383-4718935 bp Feature: domain Description: INT_RitC_C_like Location: 471 8383-471 8935 bp Feature: gene Location: 4719127-4719885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4719496-4719880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 9496-471 9880 bp Feature: gene Location: 4719997-4720128 bp Feature: gene Location: 4720652-4720960 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4720718-4720958 bp Feature: domain Description: DDE_Tnp_IS66 Location: 472071 8-4720958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DndE (pfam08870), DNA_S_dndA (TIGR03235), RVT-CRISPR, MPP_1 (cd07400), AIPR (pfam10592), HTH_XRE (smart00530), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)
xerS (PRK05084), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)

Seq: JABFUE010000002.1 Clostridium beijerinckii strain DJ051 Ga0423194_02, whole genome shotgun sequence (1237066 bp)
Overview 1 RT 1: 747185-753232 bp Neighborhood of RT #1 [747185, 753246] sigma70-ECF MurNAc-LAA RVT-GII HNHc NTP_transf_2 PqqD Feature: gene Location: 747185-747772 bp Feature: domain Description: sigma70-ECF Location: 747245-747656 bp Feature: domain Description: sigma70-ECF Location: 7472 45-747656 bp Feature: gene Location: 747968-748741 bp Feature: domain Description: MurNAc-LAA Location: 747983-748481 bp Feature: domain Description: MurNAc-LAA Location: 747983-748481 bp Feature: gene Location: 749518-751278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749776-750481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749776-750481 bp Feature: domain Description: HNHc Note: nucleases Location: 751036-751168 bp Feature: domain Description: HNHc Note: nucleases Location: 751036-751168 bp Feature: gene Location: 751888-752694 bp Feature: domain Description: NTP_transf_2 Location: 751918-752137 bp Feature: domain Description: NTP_transf_2 Location: 751918-752 137 bp Feature: gene Location: 752989-753246 bp Feature: domain Description: PqqD Location: 753064-753232 bp Feature: domain Description: PqqD Location: 753064-7532 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sigma70-ECF (TIGR02937), MurNAc-LAA (cl02713), RVT-GII, HNHc (smart00507), NTP_transf_2 (pfam01909), PqqD (pfam05402)