myRT

myRT report for GCA_013149515.1_ASM1314951v1

Download annotations/find similar RTs

Seq: JABFUL010000002.1 Clostridium beijerinckii strain DJ076 Ga0423242_02, whole genome shotgun sequence (1252679 bp)
Overview 1 RT 1: 514350-519581 bp Neighborhood of RT #1 [514350, 520483] HTH_XRE RVT-UG12 ComA-like_MBL-fold Feature: gene Location: 514350-514877 bp Feature: domain Description: HTH_XRE Location: 514362-514533 bp Feature: domain Description: HTH_XRE Location: 51 4362-51 4533 bp Feature: gene Location: 515244-515969 bp Feature: gene Location: 516043-517569 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 516385-516829 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 51 6385-51 6829 bp Feature: gene Location: 517779-518987 bp Feature: gene Location: 519314-520483 bp Feature: domain Description: ComA-like_MBL-fold Location: 519335-519581 bp Feature: domain Description: ComA-like_MBL-fold Location: 51 9335-51 9581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG12, ComA-like_MBL-fold (cd07731)

Seq: JABFUL010000003.1 Clostridium beijerinckii strain DJ076 Ga0423242_03, whole genome shotgun sequence (1027791 bp)
Overview 1 RT 1: 296538-309571 bp 2 RT 2: 480973-489405 bp Neighborhood of RT #1 [296538, 309571] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like COG0610 RVT-UG5 Neighborhood of RT #2 [480973, 489539] YqiK RVT-GII Delta6-FADS-like CxxC_CxxC_SSSS DDE_Tnp_IS240 Feature: gene Location: 296538-297812 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 296604-297174 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 2 96604-2 97174 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 297231-297807 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 2 972 31-2 97807 bp Feature: gene Location: 297828-300914 bp Feature: domain Description: COG0610 Location: 297855-300246 bp Feature: domain Description: COG0610 Location: 2 97855-3002 46 bp Feature: gene Location: 302241-305975 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 302700-303141 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 302 700-303141 bp Feature: gene Location: 305994-306935 bp Feature: gene Location: 307088-309571 bp Feature: gene Location: 480973-483228 bp Feature: domain Description: YqiK Location: 480991-482665 bp Feature: domain Description: YqiK Location: 480991-482 665 bp Feature: gene Location: 483776-483907 bp Feature: gene Location: 484476-485390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484731-485355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484731-485355 bp Feature: gene Location: 486595-487641 bp Feature: domain Description: Delta6-FADS-like Location: 486769-487462 bp Feature: domain Description: Delta6-FADS-like Location: 486769-487462 bp Feature: gene Location: 488100-489539 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 488445-488547 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 488445-488547 bp Feature: domain Description: DDE_Tnp_IS240 Location: 488958-489405 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 488958-489405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, YqiK (COG2268), RVT-GII, Delta6-FADS-like (cd03506), CxxC_CxxC_SSSS (TIGR02605), DDE_Tnp_IS240 (pfam13610)

Seq: JABFUL010000004.1 Clostridium beijerinckii strain DJ076 Ga0423242_04, whole genome shotgun sequence (947616 bp)
Overview 1 RT 1: 126183-129724 bp 2 RT 2: 168088-175951 bp Neighborhood of RT #1 [126183, 129724] RVT-UG2 COG4185 Neighborhood of RT #2 [168088, 176106] DUF3787 Peptidases_S8_CspA-like RVT-GII COG5263 Peptidases_S8_CspA-like Feature: gene Location: 126183-126422 bp Feature: gene Location: 126618-126776 bp Feature: gene Location: 127181-128494 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 127373-128195 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1273 73 -128195 bp Feature: gene Location: 128985-129551 bp Feature: domain Description: COG4185 Location: 128988-129543 bp Feature: domain Description: COG4185 Location: 128988-129543 bp Feature: gene Location: 129551-129724 bp Feature: gene Location: 168088-168252 bp Feature: domain Description: DUF3787 Location: 168097-168250 bp Feature: domain Description: DUF3 787 Location: 168097-168250 bp Feature: gene Location: 168490-170328 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 168781-170164 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 168781-170164 bp Feature: gene Location: 171353-172267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171608-172232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171608-17223 2 bp Feature: gene Location: 172888-174102 bp Feature: domain Description: COG5263 Location: 173074-174097 bp Feature: domain Description: COG5263 Location: 173 074-174097 bp Feature: gene Location: 174277-176106 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 174568-175951 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 174568-175951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, COG4185 (Predicted ABC-type ATPase ), DUF3787 (pfam12655), Peptidases_S8_CspA-like (cd07478), RVT-GII, COG5263 (Glucan-binding domain (YG repeat) )

Seq: JABFUL010000005.1 Clostridium beijerinckii strain DJ076 Ga0423242_05, whole genome shotgun sequence (591791 bp)
Overview 1 RT 1: 434925-441841 bp Neighborhood of RT #1 [434925, 441867] Adenylsucc_synt RVT-GII ARO8 ArgO Feature: gene Location: 434925-435848 bp Feature: gene Location: 435955-437205 bp Feature: domain Description: Adenylsucc_synt Location: 436003-436894 bp Feature: domain Description: Adenylsucc_synt Location: 4 36003-4 36894 bp Feature: gene Location: 437829-438743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438084-438708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 38084 -4 38708 bp Feature: gene Location: 439666-441141 bp Feature: domain Description: ARO8 Location: 439711-441106 bp Feature: domain Description: ARO8 Location: 4 39711-4 4 1106 bp Feature: gene Location: 441250-441867 bp Feature: domain Description: ArgO Location: 441253-441841 bp Feature: domain Description: ArgO Location: 4 4 1253-4 4 184 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Adenylsucc_synt (smart00788), RVT-GII, ARO8 (COG1167), ArgO (COG1279)

Seq: JABFUL010000006.1 Clostridium beijerinckii strain DJ076 Ga0423242_06, whole genome shotgun sequence (448662 bp)
Overview 1 RT 1: 367580-373769 bp Neighborhood of RT #1 [367580, 373792] Uup Uup MntR RVT-GII DUF2325 AraC Feature: gene Location: 367580-369058 bp Feature: domain Description: Uup Location: 367583-367820 bp Feature: domain Description: Uup Location: 3675 83-367820 bp Feature: domain Description: Uup Location: 367844-369053 bp Feature: domain Description: Uup Location: 367844-36905 3 bp Feature: gene Location: 369122-369490 bp Feature: domain Description: MntR Location: 369134-369482 bp Feature: domain Description: MntR Location: 369134-369482 bp Feature: gene Location: 370153-371067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370408-371032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370408-371032 bp Feature: gene Location: 372330-372629 bp Feature: domain Description: DUF2325 Location: 372336-372597 bp Feature: domain Description: DUF2325 Location: 372336-3725 97 bp Feature: gene Location: 372851-373792 bp Feature: domain Description: AraC Location: 373466-373769 bp Feature: domain Description: AraC Location: 373466-373769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), MntR (COG1321), RVT-GII, DUF2325 (pfam10087), AraC (COG2207)