myRT

myRT report for GCA_013149565.1_ASM1314956v1

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Seq: JABFUM010000001.1 Clostridium beijerinckii strain DJ077 Ga0423243_01, whole genome shotgun sequence (6020010 bp)
Overview 1 RT 1: 872005-880021 bp 2 RT 2: 918387-922765 bp 3 RT 3: 1570205-1577121 bp 4 RT 4: 2275867-2281961 bp 5 RT 5: 2455475-2466549 bp 6 RT 6: 2845440-2851647 bp 7 RT 7: 5612997-5618798 bp Neighborhood of RT #1 [872005, 880023] Peptidases_S8_CspA-like COG5263 RVT-GII Peptidases_S8_CspA-like DUF3787 Neighborhood of RT #2 [918387, 922944] COG4185 RVT-UG2 IscU Neighborhood of RT #3 [1570205, 1577147] Adenylsucc_synt RVT-GII ARO8 ArgO Neighborhood of RT #4 [2275867, 2282524] FA_desaturase RVT-GII YqiK Neighborhood of RT #5 [2455475, 2467217] RVT-UG5 COG0610 Neighborhood of RT #6 [2845440, 2851652] AraC DUF2325 RVT-GII MntR Uup Uup Neighborhood of RT #7 [5612997, 5619142] ComA-like_MBL-fold RVT-UG12 HTH_XRE Feature: gene Location: 872005-873834 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 872296-873679 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 872296-873679 bp Feature: gene Location: 874009-875223 bp Feature: domain Description: COG5263 Location: 874195-875218 bp Feature: domain Description: COG5263 Location: 8741 95-87521 8 bp Feature: gene Location: 875844-876758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876099-876723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876099-876723 bp Feature: gene Location: 877783-879621 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 878074-879457 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 878074-879457 bp Feature: gene Location: 879859-880023 bp Feature: domain Description: DUF3787 Location: 879868-880021 bp Feature: domain Description: DUF3787 Location: 879868-880021 bp Feature: gene Location: 918387-918560 bp Feature: gene Location: 918560-919126 bp Feature: domain Description: COG4185 Location: 918563-919118 bp Feature: domain Description: COG41 85 Location: 91 8563-91 91 1 8 bp Feature: gene Location: 919617-920930 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 919809-920631 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 91 9809-920631 bp Feature: gene Location: 921689-921928 bp Feature: gene Location: 922252-922944 bp Feature: domain Description: IscU Location: 922345-922765 bp Feature: domain Description: IscU Location: 922345-922765 bp Feature: gene Location: 1570205-1571128 bp Feature: gene Location: 1571235-1572485 bp Feature: domain Description: Adenylsucc_synt Location: 1571283-1572174 bp Feature: domain Description: Adenylsucc_synt Location: 1 571 283-1 5721 74 bp Feature: gene Location: 1573109-1574023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1573364-1573988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 573364-1 573988 bp Feature: gene Location: 1574946-1576421 bp Feature: domain Description: ARO8 Location: 1574991-1576386 bp Feature: domain Description: ARO8 Location: 1 574991 -1 576386 bp Feature: gene Location: 1576530-1577147 bp Feature: domain Description: ArgO Location: 1576533-1577121 bp Feature: domain Description: ArgO Location: 1 576533-1 5771 21 bp Feature: gene Location: 2275867-2276163 bp Feature: gene Location: 2276195-2276902 bp Feature: domain Description: FA_desaturase Location: 2276201-2276750 bp Feature: domain Description: FA_desaturase Location: 2276201 -2276750 bp Feature: gene Location: 2278107-2279021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278362-2278986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278362-2278986 bp Feature: gene Location: 2279590-2279721 bp Feature: gene Location: 2280269-2282524 bp Feature: domain Description: YqiK Location: 2280287-2281961 bp Feature: domain Description: YqiK Location: 2280287-2281 961 bp Feature: gene Location: 2455475-2457967 bp Feature: gene Location: 2458110-2459051 bp Feature: gene Location: 2459070-2462804 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2459529-2459970 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2459529-2459970 bp Feature: gene Location: 2463467-2463676 bp Feature: gene Location: 2464131-2467217 bp Feature: domain Description: COG0610 Location: 2464158-2466549 bp Feature: domain Description: COG061 0 Location: 24641 58-2466549 bp Feature: gene Location: 2845440-2846381 bp Feature: domain Description: AraC Location: 2846055-2846358 bp Feature: domain Description: AraC Location: 2846055-2846358 bp Feature: gene Location: 2846603-2846902 bp Feature: domain Description: DUF2325 Location: 2846609-2846870 bp Feature: domain Description: DUF2325 Location: 2846609-2846870 bp Feature: gene Location: 2848165-2849079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2848420-2849044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2848420-2849044 bp Feature: gene Location: 2849724-2850110 bp Feature: domain Description: MntR Location: 2849754-2850102 bp Feature: domain Description: MntR Location: 2849754-28501 02 bp Feature: gene Location: 2850174-2851652 bp Feature: domain Description: Uup Location: 2850177-2850414 bp Feature: domain Description: Uup Location: 28501 77-285041 4 bp Feature: domain Description: Uup Location: 2850438-2851647 bp Feature: domain Description: Uup Location: 2850438-2851 647 bp Feature: gene Location: 5612997-5614178 bp Feature: domain Description: ComA-like_MBL-fold Location: 5613030-5613276 bp Feature: domain Description: ComA-like_MBL-fold Location: 561 3030-561 3276 bp Feature: gene Location: 5614505-5615713 bp Feature: gene Location: 5615923-5617449 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 5616265-5616709 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 561 6265-561 6709 bp Feature: gene Location: 5617523-5618248 bp Feature: gene Location: 5618615-5619142 bp Feature: domain Description: HTH_XRE Location: 5618627-5618798 bp Feature: domain Description: HTH_XRE Location: 561 8627-561 8798 bp Sorry, your 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Associated domains:myRT Peptidases_S8_CspA-like (cd07478), COG5263 (Glucan-binding domain (YG repeat) ), RVT-GII, DUF3787 (pfam12655), COG4185 (Predicted ABC-type ATPase ), RVT-UG2, IscU (COG0822), Adenylsucc_synt (smart00788), ARO8 (COG1167), ArgO (COG1279)
FA_desaturase (pfam00487), YqiK (COG2268), RVT-UG5, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AraC (COG2207), DUF2325 (pfam10087), MntR (COG1321), Uup (COG0488), ComA-like_MBL-fold (cd07731), RVT-UG12
HTH_XRE (smart00530)