myRT

myRT report for GCA_013149575.1_ASM1314957v1

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Seq: JABFUH010000001.1 Clostridium butyricum strain DJ065 Ga0423215_01, whole genome shotgun sequence (3925195 bp)
Overview 1 RT 1: 1931206-1938944 bp 2 RT 2: 2085570-2090769 bp 3 RT 3: 2483230-2490105 bp 4 RT 4: 3218639-3227271 bp 5 RT 5: 3280515-3283913 bp Neighborhood of RT #1 [1931206, 1939036] PRK05218 sensory_box sensory_box HDGYP RVT-GII GIIM FtsX FtsX LolD Neighborhood of RT #2 [2085570, 2090769] Beta4Glucosyltransferase TPR group_II_RT_mat RVT-GII excise Neighborhood of RT #3 [2483230, 2490116] M14_ASTE_ASPA-like M14_ASTE_ASPA-like RVT-GII GIIM PRK02250 glcD Neighborhood of RT #4 [3218639, 3227303] Cadherin-like Cadherin-like Cadherin-like CW_binding_1 CW_binding_1 COG5263 COG5263 RVT-GII HTH_32 rve pepcterm_ATPase Neighborhood of RT #5 [3280515, 3283930] GalU RVT-GII GalU YveK Feature: gene Location: 1931206-1933140 bp Feature: domain Description: PRK05218 Location: 1931215-1933126 bp Feature: domain Description: PRK0521 8 Location: 1 931 21 5-1 9331 26 bp Feature: gene Location: 1933219-1934121 bp Feature: domain Description: sensory_box Location: 1933240-1933570 bp Feature: domain Description: sensory_box Location: 1 933240-1 933570 bp Feature: domain Description: sensory_box Location: 1933600-1933696 bp Feature: domain Description: sensory_box Location: 1 933600-1 933696 bp Feature: domain Description: HDGYP Location: 1933726-1934098 bp Feature: domain Description: HDGYP Location: 1 933726-1 934098 bp Feature: gene Location: 1934273-1935688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1934630-1935248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 934630-1 935248 bp Feature: domain Description: GIIM Note: maturase Location: 1935299-1935524 bp Feature: domain Description: GIIM Note: maturase Location: 1 935299-1 935524 bp Feature: gene Location: 1936195-1938252 bp Feature: domain Description: FtsX Location: 1936447-1936732 bp Feature: domain Description: FtsX Location: 1 936447-1 936732 bp Feature: domain Description: FtsX Location: 1937980-1938187 bp Feature: domain Description: FtsX Location: 1 937980-1 9381 87 bp Feature: gene Location: 1938254-1939036 bp Feature: domain Description: LolD Location: 1938284-1938944 bp Feature: domain Description: LolD Location: 1 938284-1 938944 bp Feature: gene Location: 2085570-2086616 bp Feature: domain Description: Beta4Glucosyltransferase Location: 2085576-2086263 bp Feature: domain Description: Beta4Glucosyltransferase Location: 2085576-2086263 bp Feature: domain Description: TPR Location: 2086296-2086572 bp Feature: domain Description: TPR Location: 2086296-2086572 bp Feature: gene Location: 2087432-2087698 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2087438-2087576 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2087438-2087576 bp Feature: gene Location: 2087861-2088775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2088116-2088728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20881 1 6-2088728 bp Feature: gene Location: 2089505-2090509 bp Feature: domain Description: excise Location: 2089523-2089661 bp Feature: domain Description: excise Location: 2089523-2089661 bp Feature: gene Location: 2090617-2090769 bp Feature: gene Location: 2483230-2484165 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 2483257-2483881 bp Feature: domain Description: M1 4_ASTE_ASPA-like Location: 2483257-2483881 bp Feature: gene Location: 2484158-2485099 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 2484188-2484812 bp Feature: domain Description: M1 4_ASTE_ASPA-like Location: 24841 88-248481 2 bp Feature: gene Location: 2485225-2486727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2485669-2486287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2485669-2486287 bp Feature: domain Description: GIIM Note: maturase Location: 2486338-2486554 bp Feature: domain Description: GIIM Note: maturase Location: 2486338-2486554 bp Feature: gene Location: 2487188-2488477 bp Feature: domain Description: PRK02250 Location: 2488253-2488442 bp Feature: domain Description: PRK02250 Location: 2488253-2488442 bp Feature: gene Location: 2488707-2490116 bp Feature: domain Description: glcD Location: 2488878-2490105 bp Feature: domain Description: glcD Location: 2488878-24901 05 bp Feature: gene Location: 3218639-3220483 bp Feature: domain Description: Cadherin-like Location: 3218858-3219131 bp Feature: domain Description: Cadherin-like Location: 321 8858-321 91 31 bp Feature: domain Description: Cadherin-like Location: 3219179-3219449 bp Feature: domain Description: Cadherin-like Location: 321 91 79-321 9449 bp Feature: domain Description: Cadherin-like Location: 3219488-3219761 bp Feature: domain Description: Cadherin-like Location: 321 9488-321 9761 bp Feature: domain Description: CW_binding_1 Location: 3219977-3220031 bp Feature: domain Description: CW_binding_1 Location: 321 9977-3220031 bp Feature: domain Description: CW_binding_1 Location: 3220037-3220091 bp Feature: domain Description: CW_binding_1 Location: 3220037-3220091 bp Feature: domain Description: COG5263 Location: 3220256-3220475 bp Feature: domain Description: COG5263 Location: 3220256-3220475 bp Feature: gene Location: 3221057-3222877 bp Feature: domain Description: COG5263 Location: 3222437-3222872 bp Feature: domain Description: COG5263 Location: 3222437-3222872 bp Feature: gene Location: 3223351-3224451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223708-3224326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223708-3224326 bp Feature: gene Location: 3225253-3226500 bp Feature: domain Description: HTH_32 Location: 3225424-3225652 bp Feature: domain Description: HTH_32 Location: 3225424-3225652 bp Feature: domain Description: rve Location: 3225718-3226075 bp Feature: domain Description: rve Location: 322571 8-3226075 bp Feature: gene Location: 3226524-3227303 bp Feature: domain Description: pepcterm_ATPase Location: 3226584-3227271 bp Feature: domain Description: pepcterm_ATPase Location: 3226584-3227271 bp Feature: gene Location: 3280515-3280742 bp Feature: domain Description: GalU Location: 3280527-3280728 bp Feature: domain Description: GalU Location: 3280527-3280728 bp Feature: gene Location: 3281459-3281599 bp Feature: gene Location: 3281815-3282315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3281821-3282019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3281 821 -328201 9 bp Feature: gene Location: 3282444-3283103 bp Feature: domain Description: GalU Location: 3282450-3283080 bp Feature: domain Description: GalU Location: 3282450-3283080 bp Feature: gene Location: 3283244-3283930 bp Feature: domain Description: YveK Location: 3283253-3283913 bp Feature: domain Description: YveK Location: 3283253-328391 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05218 (heat shock protein 90; Provisional), sensory_box (TIGR00229), HDGYP (COG2206), RVT-GII, GIIM (pfam08388), FtsX (pfam02687), LolD (COG1136), Beta4Glucosyltransferase (cd02511), TPR (smart00028), group_II_RT_mat (TIGR04416)
excise (TIGR01764), M14_ASTE_ASPA-like (cd06910), PRK02250 (hypothetical protein; Provisional), glcD (TIGR00387), Cadherin-like (pfam12733), CW_binding_1 (pfam01473), COG5263 (Glucan-binding domain (YG repeat) ), HTH_32 (pfam13565), rve (pfam00665), pepcterm_ATPase (TIGR03015)
GalU (COG1210), YveK (COG3944)