myRT

myRT report for GCA_013149605.1_ASM1314960v1

Download annotations/find similar RTs

Seq: JABFUR010000001.1 Clostridium saccharobutylicum strain DJ094 Ga0423253_01, whole genome shotgun sequence (5104379 bp)
Overview 1 RT 1: 16993-21587 bp 2 RT 2: 2662473-2670382 bp 3 RT 3: 2784699-2793417 bp 4 RT 4: 3424684-3427846 bp Neighborhood of RT #1 [16993, 21889] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [2662473, 2670382] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #3 [2784699, 2793417] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #4 [3424684, 3427884] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 16993-17259 bp Feature: domain Description: plantaricin Location: 17014-17257 bp Feature: domain Description: plantaricin Location: 1 701 4-1 7257 bp Feature: gene Location: 17304-17570 bp Feature: domain Description: plantaricin Location: 17325-17568 bp Feature: domain Description: plantaricin Location: 1 7325-1 7568 bp Feature: gene Location: 17644-19179 bp Feature: RT Description: RVT_N Location: 17716-17959 bp Feature: RT Description: RVT_N Location: 1 771 6-1 7959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18004-18664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8004-1 8664 bp Feature: domain Description: GIIM Note: maturase Location: 18715-18952 bp Feature: domain Description: GIIM Note: maturase Location: 1 871 5-1 8952 bp Feature: domain Description: rve_2 Location: 19096-19171 bp Feature: domain Description: rve_2 Location: 1 9096-1 91 71 bp Feature: gene Location: 19705-20562 bp Feature: domain Description: PHA02517 Location: 19993-20542 bp Feature: domain Description: PHA0251 7 Location: 1 9993-20542 bp Feature: gene Location: 20621-21889 bp Feature: domain Description: DDE_Tnp_1 Location: 20972-21587 bp Feature: domain Description: DDE_Tnp_1 Location: 20972-21 587 bp Feature: gene Location: 2662473-2665040 bp Feature: domain Description: UvrD Location: 2662995-2664123 bp Feature: domain Description: UvrD Location: 2662995-26641 23 bp Feature: domain Description: UvrD Location: 2664300-2664540 bp Feature: domain Description: UvrD Location: 2664300-2664540 bp Feature: gene Location: 2665326-2666333 bp Feature: gene Location: 2666545-2667669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2666761-2667319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2666761 -266731 9 bp Feature: gene Location: 2667971-2669275 bp Feature: domain Description: Enpp Location: 2667989-2669225 bp Feature: domain Description: Enpp Location: 2667989-2669225 bp Feature: gene Location: 2669846-2670382 bp Feature: gene Location: 2784699-2785226 bp Feature: domain Description: Sig70_famx3 Location: 2784705-2785188 bp Feature: domain Description: Sig70_famx3 Location: 2784705-27851 88 bp Feature: gene Location: 2785445-2786470 bp Feature: domain Description: DUF1835 Location: 2785460-2785829 bp Feature: domain Description: DUF1 835 Location: 2785460-2785829 bp Feature: domain Description: DUF3658 Location: 2785919-2786231 bp Feature: domain Description: DUF3658 Location: 278591 9-2786231 bp Feature: gene Location: 2787058-2788563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2787694-2788336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2787694-2788336 bp Feature: gene Location: 2788560-2790368 bp Feature: gene Location: 2790370-2793417 bp Feature: gene Location: 3424684-3424818 bp Feature: gene Location: 3425286-3425693 bp Feature: gene Location: 3426127-3426765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426463-3426646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426463-3426646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426649-3426754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3426649-3426754 bp Feature: gene Location: 3427236-3427586 bp Feature: gene Location: 3427678-3427884 bp Feature: domain Description: DDE_Tnp_1 Location: 3427708-3427846 bp Feature: domain Description: DDE_Tnp_1 Location: 3427708-3427846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), UvrD (COG0210), RVT-Retrons, Enpp (cd16018)
Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)